TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic s... 169 e-102 gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic s... 92 9e-19 gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s... 70 6e-12 gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic s... 66 7e-11 gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic s... 55 2e-07 gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic s... 52 2e-06 gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic s... 44 4e-04 gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic s... 39 0.012 gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic s... 37 0.058 gb|GL291022.1| Polysphondylium pallidum PN500 unplaced genomic s... 35 0.22 >gb|GL290995.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold13, whole genome shotgun sequence Length = 1052162 Score = 169 bits (429), Expect(4) = e-102 Identities = 78/181 (43%), Positives = 116/181 (64%), Gaps = 7/181 (3%) Frame = -1 Query: 163 MTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXX-------IPELIELLTSQISI 215 MT K++K LE T F+ +P + + + LI+ LT+ + + Sbjct: 301682 MTNKLKKVLEKTCFKDSPYVAISANPSSSSDAAPASAAATGDNNIGVDRLIKELTNYVEL 301503 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 P RD GPFL DHCF IKGQG+VMTGT+L GS+ + ++ IP L + KKVKSMQMFH Sbjct: 301502 PRRDDQGPFLFEFDHCFQIKGQGSVMTGTVLRGSVEINQNIHIPQLNIEKKVKSMQMFHK 301323 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKF 335 P+ A QGDR+GICVTQ D LLERGL+C P+++ ++ A++++EK+ +++ ++TK++F Sbjct: 301322 PVKKASQGDRVGICVTQLDANLLERGLLCTPKTVPLLNGAIVAIEKVRFYKNEVKTKSQF 301143 Query: 336 H 336 H Sbjct: 301142 H 301140 Score = 103 bits (258), Expect(4) = e-102 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 46/253 (18%) Frame = -2 Query: 337 ITVGHETVMGRLMFFS----------PAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTP 386 +T+GH TV+ +FF P+ + L+ FN EY + + Sbjct: 301063 VTIGHSTVIATAIFFGNKKQQTEQQQQQPETMIENMTLNQFNSKLEYSYLDSL------- 300905 Query: 387 AVTDNDEADKKAGQATEGHCP-RQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLA 445 AT P Q+AL+ FE PV CP ++IGS+LD ++ T++CR+A Sbjct: 300904 -------------NATGQEYPVGSQYALLTFEHPVLCPLNSVIIGSKLDVNLDTSSCRIA 300764 Query: 446 FHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERAMDDYSVIGRSLFKKETNIQLFVG 505 FHG L+ G++ N L +YK+K K G +ER + ++IG+++F K+T++ F+G Sbjct: 300763 FHGELVEGIDVTN-KQLLNNHLHIYKIKAKEGQIERIHSESTLIGKNIFGKDTDLSKFIG 300587 Query: 506 LKV-----------------------------------HLSTGELGIIDSAFGQSGKFKI 530 +KV + G +G+++S FG++GK KI Sbjct: 300586 MKVIFDNGMFDVLLLL*NNKRKNKSS*FNLKN*LII*CYFKIGVVGLLESGFGKTGKVKI 300407 Query: 531 HIPGGLSPESKKI 543 +P + + K+ Sbjct: 300406 TLPASVDINTIKV 300368 Score = 80.9 bits (198), Expect(4) = e-102 Identities = 38/56 (67%), Positives = 47/56 (83%) Frame = -3 Query: 106 GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAID 161 G+QIID+M LVID+TKG+QTQ+AEC+VIG+I C+K +VVLNKID LP RQ ID Sbjct: 301935 GSQIIDMMFLVIDITKGIQTQTAECIVIGEITCKKAIVVLNKIDQLPIESRQNKID 301768 Score = 79.0 bits (193), Expect(4) = e-102 Identities = 45/94 (47%), Positives = 50/94 (53%) Frame = -1 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 +GH+DSGK DK P S+ERGITLDLGFS F LP RL+S Sbjct: 302264 MGHVDSGKTSLAKALSTSLSTAALDKSPASQERGITLDLGFSAFHSELPDRLKS------ 302103 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGG 106 Q TLVDCPGHASLI+TIIGG Sbjct: 302102 --HPDVIANNYNQIQYTLVDCPGHASLIKTIIGG 302007 Score = 29.3 bits (64), Expect = 9.3 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%) Frame = -2 Query: 233 SIKGQGTVMTGTILSGSI----SLGDSVEIPALKVVKKVKSMQM 272 +++ +G +T LSGSI + D++ ++K+VKK+KSM M Sbjct: 530998 TLESEGKTVTIVALSGSIIGVIGMMDTLRDESVKIVKKLKSMGM 530867 >gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig9, whole genome shotgun sequence Length = 1029409 Score = 92.4 bits (228), Expect = 9e-19 Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 7/284 (2%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK P+ R+RGIT++ + +DCPGH Sbjct: 826770 DKSPEERQRGITINASHIEYE-------------------------SDNRHYAHIDCPGH 826874 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDLLPEGK 155 I+ +I GA +D +LV+ G Q Q+ E +++ ++ K+VV LNK+D Sbjct: 826875 QHYIKNMITGAAQMDGAILVVSAPDGPQEQTREHVILSREVGIPKIVVFLNKMDNADPDL 827054 Query: 156 RQAA---IDKMTKKMQKTLENTKF-RGAPIIPVXXXXXXXXXXXXXXXXXIPELIELLTS 211 + + ++ K E T F +GA + + I +L+ +L + Sbjct: 827055 VEIVEMEVRELLAKYGFDGEATPFVKGAAAVALAEDPASPTEFGRLA---IDKLVSVLDN 827225 Query: 212 QISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVK--S 269 +I +P R PFLM V+ FSI G+GTV TG I G + +GD V I +K V KV Sbjct: 827226 EIPLPKRAIDKPFLMPVEEVFSISGRGTVATGRIDQGVVKVGDEVAIVGIKPVPKVSVTG 827405 Query: 270 MQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVH 313 ++MF + A G+ +G+ + + + RG V + H Sbjct: 827406 LEMFGKLLDFAQAGENVGVLLRGLKREDVVRGEVISKPGTIKAH 827537 >gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2, whole genome shotgun sequence Length = 3242543 Score = 69.7 bits (169), Expect = 6e-12 Identities = 63/280 (22%), Positives = 108/280 (38%), Gaps = 13/280 (4%) Frame = -3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F T++D PGH Sbjct: 924645 DKLKAERERGITIDIALWKFET-------------------------NKYYFTIIDAPGH 924541 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +LVI + K QT+ L+ + ++++V +NK Sbjct: 924540 RDFIKNMITGTSQADCAVLVIASPTGEFEAGIAKNGQTRE-HALLAYTLGVKQMIVAINK 924364 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXI--P 203 +D + ++ K+ ++ + + +P+ P Sbjct: 924363 MDEKSTNYSEGRYSEIVKETSSFIKKIGYNPEKVAFVPISGWNGDNMLERSTNMPWYKGP 924184 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 L+E L + + P R P + + + I G GTV G + +G + G V + Sbjct: 924183 TLLEALDAIVE-PKRPVDKPLRIPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPAGL 924007 Query: 264 VKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 +VKS++M H +T A GD +G V K ++RG+V Sbjct: 924006 STEVKSVEMHHEQLTQAAPGDNVGFNVKNLSVKDIKRGMV 923887 Score = 60.5 bits (145), Expect = 4e-09 Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 23/252 (9%) Frame = -3 Query: 95 GHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL-NKIDLLP 152 GH L+ T++ GA ++D ML+I + Q Q+AE + +I + +++L NKIDL+ Sbjct: 2990652 GHDVLMATMLNGAAVMDAAMLLIAGNESCPQPQTAEHIAAIEIMNLRNIIILQNKIDLVK 2990473 Query: 153 EGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELLTSQ 212 E AA + ++ K ++ T GAPIIP+ I + E + + Sbjct: 2990472 E----AAAKEQYGQILKFIQGTVAEGAPIIPI----------SAQMKYNIDVICEYIVKK 2990335 Query: 213 ISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSVEIPALKVV 264 I IP RD + + V F + +G V G+I+ G + +GD +E+ + Sbjct: 2990334 IPIPVRDFTSEPRLIVIRSFDVNKPGAKVDELKGGVAGGSIIKGVLRVGDEIEVRPGVIT 2990155 Query: 265 K-------------KVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHT 311 K ++ S+ + A+ G +G+ T+ DP L C + L Sbjct: 2990154 KDLDGRMRCSPLFSRIISLYAEENDLQYAVPGGLIGV-GTKIDPSL------CRADRL-- 2990002 Query: 312 VHAALISVEKIP 323 V L SV K+P Sbjct: 2990001 VGQVLGSVGKLP 2989966 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/64 (28%), Positives = 31/64 (48%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 V L+D PGH + +I D ++++D +G+ Q+ L + +V+NK Sbjct: 2133245 VNLIDSPGHVDFSSEVSTAVRITDGALVLVDAIEGVCIQTHAVLRQAYQERVRPCLVINK 2133424 Query: 148 IDLL 151 ID L Sbjct: 2133425 IDRL 2133436 >gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold11, whole genome shotgun sequence Length = 1505626 Score = 66.2 bits (160), Expect = 7e-11 Identities = 60/264 (22%), Positives = 101/264 (38%), Gaps = 13/264 (4%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D RERGIT+D F + VT++D PGH Sbjct: 1128639 DNLKSERERGITIDCSLMRFDID-------------------------KYDVTIIDAPGH 1128743 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG--------MQTQSAECLVIGQIACQKLVVVLNKI 148 I+ +I G+ D +LV+ KG + L+ + ++L+V +NK+ Sbjct: 1128744 KDFIKNMITGSSQADCAVLVVSSVKGEFEAGIDKKGSTREHALLAYTLGVRQLIVAVNKM 1128923 Query: 149 D-LLPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVXXXXXXXXXXXXXXXXXI--P 203 D +A +++ K+ ++ + P IP+ P Sbjct: 1128924 DDEKTTNYSEARFNEIVKETSSFIKKIGYNPEKVPFIPLSAWNGDNMLEKSTKMPWYNGP 1129103 Query: 204 ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 L E L S + P R P + + + I G GTV G + +G + G V I + Sbjct: 1129104 TLYEALNSIVE-PKRPVDKPLRLPIQDVYKIGGIGTVAVGRVETGVMKAGQPVVIAPVNK 1129280 Query: 264 VKKVKSMQMFHMPITSAMQGDRLG 287 V +VKS++ H+ + A+ G +G Sbjct: 1129281 VLEVKSIERHHVQVDQAIPGFNVG 1129352 Score = 32.7 bits (73), Expect = 0.84 Identities = 23/87 (26%), Positives = 37/87 (42%) Frame = +1 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 ++ LVD PGH + +++D + + D G+Q QS + V +N Sbjct: 635992 RINLVDTPGHVDFTVEVERSVRVMDGAVAIFDAVAGVQAQSITVWNQAERYRVPRVAFVN 636171 Query: 147 KIDLLPEGKRQAAIDKMTKKMQKTLEN 173 K+D R+ A T KM K+ N Sbjct: 636172 KMD------REGATADKTLKMLKSRLN 636234 >gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold6, whole genome shotgun sequence Length = 2018088 Score = 55.1 bits (131), Expect = 2e-07 Identities = 58/279 (20%), Positives = 115/279 (41%), Gaps = 12/279 (4%) Frame = -2 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D+ + RERG+T+D+ F ++TL+D PGH Sbjct: 7391 DEHQEERERGVTMDVCVRYFETE-------------------------HRKITLLDAPGH 7287 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE------CLVIGQIACQKLVVVLNKIDL 150 + +I G D+ +L+I+ ++ S+E L+ + +L+V +NK+DL Sbjct: 7286 RDFVPNMISGTTQADVAILLINASEFEAGFSSEGQTKEHALLAKSLGIMQLIVAINKMDL 7107 Query: 151 LPEGKRQAAIDKMTKKMQKTLENTKF--RGAPIIPVXXXXXXXXXXXXXXXXXIPELIEL 208 + + + + +T+ +++ L + KF + +P+ Sbjct: 7106 VDWSEER--YNYITETLKQFLVSAKFNEKNLYFMPISGFKGDNLIEKIADPRCSWYTGNT 6933 Query: 209 LTSQI---SIPTRDPSGPFLMSVDHCFSIKGQGTVMT-GTILSGSISLGDSVEIPALKVV 264 L QI S+ R + PF M V+ + +G+V+ G I +G + +GD + I + Sbjct: 6932 LVQQIDSFSVGERLINKPFRMGVNDIYKTNSKGSVLVGGKIEAGVLGVGDKLLISPGNEL 6753 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 VK+++ H A+ GD + + + +L G + Sbjct: 6752 CTVKAIRRAHNDSDWAVGGDNIDLSLAIDVTNILRLGSI 6636 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/67 (34%), Positives = 39/67 (58%) Frame = +3 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 L+D PGH S G+ + DL +LVID+ G++ Q+ E + + ++ VV LNK+D Sbjct: 513255 LIDTPGHESFNNLRSRGSGLCDLAILVIDIVHGIEKQTVESINLLRMRKTPFVVALNKVD 513434 Query: 150 LLPEGKR 156 + E ++ Sbjct: 513435 RVYEWQK 513455 Score = 40.8 bits (94), Expect = 0.003 Identities = 37/187 (19%), Positives = 76/187 (40%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + +LV+D +G+Q Q+ + + ++V V+NK Sbjct: 483415 LNLIDTPGHVDFNYEVSRSLMACQGALLVVDACQGVQAQTMANYYLALDSGLEVVPVINK 483236 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIE 207 IDL A ++ + ++++ T F +I V I +++ Sbjct: 483235 IDL-----PTANVEMVKEQLKNTF---GFHPNDVICV----------SAKSGIGITDILP 483110 Query: 208 LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKV 267 + ++ P D PF + + + +G + ++ GSI GD ++ A +V Sbjct: 483109 AVIDRVPPPQGDTKAPFKALLFDSWFDRFRGVICLINVVDGSIKKGDVIQSAASGQTYEV 482930 Query: 268 KSMQMFH 274 + + H Sbjct: 482929 LDLGVMH 482909 Score = 33.9 bits (76), Expect = 0.38 Identities = 14/62 (22%), Positives = 31/62 (50%) Frame = -2 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH + + ++ D ++V+D +G+ Q+ + + V++NK+D Sbjct: 517256 ILDTPGHVNFSDEVTASMRLCDSAVIVVDALEGVMMQTERLIQHAVNEGLSIAVIINKVD 517077 Query: 150 LL 151 L Sbjct: 517076 RL 517071 >gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold4, whole genome shotgun sequence Length = 1229170 Score = 51.6 bits (122), Expect = 2e-06 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 15/225 (6%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQK-LVVVL 145 V +D P H L+ + + +D MLVI + Q Q+A+ L I +I K +++V Sbjct: 1003251 VCYIDYPTHNVLMGALFNCERFVDATMLVIASNEPCPQQQTADHLAIVEILKLKNIIIVQ 1003430 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205 NKIDL+ ++Q+ ++ ++Q+ ++ + GAPIIP+ Sbjct: 1003431 NKIDLV---RQQSRANEHHNQIQQFVKGSVAEGAPIIPISAQLKWNIDVLCEHVVTKIPT 1003601 Query: 206 IELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVK 265 + + S P F M+ + + + +G + G +LSG + +GD +EI + K Sbjct: 1003602 SPISDNYNSAPHLIVVRSFNMNAPYRKAEEMKGGTVRGLLLSGILRVGDDIEIRPGIITK 1003781 Query: 266 -------------KVKSMQMFHMPITSAMQGDRLGICVTQFDPKL 297 K+ S+ + A+ G +G+ +T+ DP L Sbjct: 1003782 NHDGTFSCTPLFSKIVSLFAEDNELQYAVPGGLIGV-LTKLDPSL 1003913 >gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig6, whole genome shotgun sequence Length = 254162 Score = 43.9 bits (102), Expect = 4e-04 Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 15/230 (6%) Frame = -2 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE-------CLVIGQIACQKL 141 T++D PGH + + +I GA D+ +LV+ KG + + I + L Sbjct: 97900 TILDAPGHKNYVPNMISGAAQADVGILVVSSKKGEFEAGVDGGQTIEHARLAKMIGIKHL 97721 Query: 142 VVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXX 201 +V++NK+D +A D++ +K+ L+ F P Sbjct: 97720 IVLVNKMDEPTVNWSKARYDEICEKITGHLKKCGFN--PKKDFQFVPGSGYTSANIKDTV 97547 Query: 202 IPELIELLTSQISIPT--------RDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLG 253 EL T I T R+ SG + + F +G VM G + SGSI+LG Sbjct: 97546 SKELCPWNTGVSLIETLDLLPQFERNESGALRVPIIDSFKDRGIVHVM-GKVESGSITLG 97370 Query: 254 DSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 + I K +V S+ + G+ L I + D + + +G + Sbjct: 97369 QQIFIMPGKTKVEVLSLSNESCNFRTGRTGENLRIGLKGIDDEQIRQGSI 97220 >gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold1, whole genome shotgun sequence Length = 1995969 Score = 38.9 bits (89), Expect = 0.012 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 19/210 (9%) Frame = -2 Query: 115 LVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENT 174 L+I G + E L I + +V+ KID PE ++ ++K L++ Sbjct: 303188 LMIGANMGCVGMTKEHLGIALALRVPVYIVITKIDKCPEN----VLNDTMNDIKKILKSP 303021 Query: 175 KFRGAPIIPVXXXXXXXXXXXXXXXXXIP---------ELIELLTSQISI-PTRDP---- 220 R P++ P E ++LL + +++ PT+ Sbjct: 303020 GSRKLPVVIRNHDDVVVAARNFVSERIAPIFCVSNVTGENLDLLKTFLNLLPTKKEWDAV 302841 Query: 221 -SGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSV----EIPALKVVKKVKSMQMFHM 275 P + +D + + G GTV++GT++ G I+ G+++ + +VK++ + Sbjct: 302840 IDKPSQLDIDSIWHVSGVGTVVSGTVMKGLITAGENLLLGPDDHGTFQTVQVKTIHSKRL 302661 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLVCA 305 P+ G I + + + +G++ A Sbjct: 302660 PVKQVRAGQTASIALKKIKRSAIRKGMILA 302571 >gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold8, whole genome shotgun sequence Length = 2270872 Score = 36.6 bits (83), Expect = 0.058 Identities = 23/86 (26%), Positives = 32/86 (37%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D RERGIT+D F + VT++D PGH Sbjct: 1641159 DNLKSERERGITIDCSLMRFDID-------------------------RYDVTIIDAPGH 1641263 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKG 122 I+ +I G+ D +LV+ KG Sbjct: 1641264 KDFIKNMITGSSQADCAVLVVSSVKG 1641341 Score = 33.5 bits (75), Expect = 0.49 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVL-- 145 + L+D PGH + ++ D ++V+D +G+ Q+ V+ Q +++V VL Sbjct: 754516 LNLIDSPGHVDFSSEVTAALRVTDGALVVVDAIEGVCVQTE--TVLRQALSERIVPVLFV 754689 Query: 146 NKIDLL 151 NK+D L Sbjct: 754690 NKMDRL 754707 Score = 33.5 bits (75), Expect = 0.49 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVL-- 145 + L+D PGH + ++ D ++V+D +G+ Q+ V+ Q +++V VL Sbjct: 1223320 LNLIDSPGHVDFSSEVTAALRVTDGALVVVDAIEGVCVQTE--TVLRQALSERIVPVLFV 1223147 Query: 146 NKIDLL 151 NK+D L Sbjct: 1223146 NKMDRL 1223129 >gb|GL291022.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig25, whole genome shotgun sequence Length = 153834 Score = 34.7 bits (78), Expect = 0.22 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D +G+ Q+ L K V+ LNK Sbjct: 13174 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQAVAERIKPVLFLNK 12995 Query: 148 ID 149 +D Sbjct: 12994 VD 12989 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,984,960 Number of Sequences: 42 Number of extensions: 217023 Number of successful extensions: 715 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 593 Number of HSP's gapped (non-prelim): 262 length of query: 596 length of database: 10,980,844 effective HSP length: 106 effective length of query: 490 effective length of database: 10,976,392 effective search space: 5378432080 effective search space used: 5378432080 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 64 (29.3 bits)