TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor (eEFSec) # Homo sapiens # Complete (596 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 98 1e-20 dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp... 94 1e-19 dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl... 78 1e-14 dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp... 70 2e-12 dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl... 48 1e-05 dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp... 48 1e-05 dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp... 43 3e-04 dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, compl... 43 4e-04 dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl... 41 0.001 dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, compl... 40 0.003 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 97.8 bits (242), Expect = 1e-20 Identities = 53/164 (32%), Positives = 87/164 (53%) Frame = -2 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 +GH+D GK DK P SRE G T+DLGFSC +P + Sbjct: 361549 MGHVDVGKTTLVRFLSEILSTAALDKHPASRELGRTIDLGFSCTRLPASPVV---VQLVD 361379 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLV 132 Q+T +DCPGHASL+RT++ GA ++DL++LV+D + G+Q Q+ ECL Sbjct: 361378 DEAASLENVSYEGLQLTWIDCPGHASLLRTVLLGASVMDLLLLVVDASAGIQAQTLECLA 361199 Query: 133 IGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKF 176 + I + +VV L+K D + + + A +++ +++Q + ++ Sbjct: 361198 LAAIFTKHVVVALHKCDRVRD--QPAVLEERLQQLQAYVSTNRW 361073 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 19/86 (22%) Frame = -2 Query: 225 LMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIP-------------------ALKVVK 265 L +VDH F + GQGTV+TG +L+G + +G+ + + + Sbjct: 360841 LFAVDHAFEVTGQGTVLTGILLTGRLRIGEVIHAAFVGAGVASTKSRSEGTKKRLIADAR 360662 Query: 266 KVKSMQMFHMPITSAMQGDRLGICVT 291 V+S+Q++ ++ + GDR + +T Sbjct: 360661 SVRSIQVYRSSVSEIVAGDRAALGLT 360584 Score = 38.1 bits (87), Expect = 0.010 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = -3 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 ++ ++D PGHA + + D M+LV+D +G + Q+ L Q+++VV+N Sbjct: 287313 RINVIDTPGHADFGGEVQRVLSMADAMLLVVDSVEGPRPQTRYVLREALRLGQRVLVVVN 287134 Query: 147 KID 149 KID Sbjct: 287133 KID 287125 >dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete sequence Length = 1282939 Score = 94.4 bits (233), Expect = 1e-19 Identities = 74/286 (25%), Positives = 125/286 (43%), Gaps = 9/286 (3%) Frame = +2 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK P+ R RGIT++ + P + VDCPGH Sbjct: 1267253 DKAPEERARGITINASHLKYETPSRSYAH-------------------------VDCPGH 1267357 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDLLPEGK 155 ++ I GA +D +LV+ G Q Q+ E +++ Q+ VV LNK D++ + + Sbjct: 1267358 RDFVKNFITGAAQVDTAILVVSGPDGPQPQTQEHVLLSKQVGVPNFVVYLNKCDMVDDPE 1267537 Query: 156 RQAAIDKMTKKMQKTLENTKFRG--APIIPVXXXXXXXXXXXXXXXXXIPELIELLTSQI 213 +D + ++++ L ++ G PI+ I +L+E+L ++ Sbjct: 1267538 ---LLDLVELEVRELLSKYEYDGDNVPIVRGSALKALQGDQSELGCGSIHKLLEIL-DKV 1267705 Query: 214 SIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKK------V 267 IP RD PFLM ++ FSI G+GTV+TG + +G + GD +EI L+ + V Sbjct: 1267706 PIPKRDLEKPFLMPIEDSFSITGRGTVVTGRVETGILRPGDEIEIVGLRPPEVAPMRTIV 1267885 Query: 268 KSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVH 313 ++ F + A G+ +G + + + RG V A H Sbjct: 1267886 TGIETFKQSLPYAEAGENVGCLLRGVKREDVLRGQVLAKPGTSRAH 1268023 Score = 34.3 bits (77), Expect = 0.15 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = -2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 V L+D PGH + ++ D ++V+D +G+ Q+ L K V+ +NK Sbjct: 1065642 VNLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALAERIKPVLTINK 1065463 Query: 148 ID 149 +D Sbjct: 1065462 LD 1065457 >dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete sequence Length = 739753 Score = 77.8 bits (190), Expect = 1e-14 Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 17/285 (5%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F T++D PGH Sbjct: 577365 DKLKAERERGITIDIALWKFETD-------------------------KYYFTIIDAPGH 577469 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G DL +LV+ ++ QT+ L+ + ++++V +NK Sbjct: 577470 RDFIKNMITGTSQADLAILVVASPPGEFEAGISSNGQTRE-HALLAYTLGVKQMIVAVNK 577646 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVXXXXXXXXXXXXXXXXXI--- 202 +D Q+ D++TK++ L+ + P +P+ + Sbjct: 577647 MDDKNVNWSQSRYDEITKELNLYLKKVGYNPDKVPKVPISGWTGDNLFERVPSDHPLAKW 577826 Query: 203 ---PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIP 259 P L+E L + I P R P + + + I G GTV G + +G + G V Sbjct: 577827 YKGPALLEALDA-IEPPKRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFA 578003 Query: 260 ALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVC 304 + +VKS++M H + A GD +G V K L+RG VC Sbjct: 578004 PTGLTTEVKSVEMHHESLPEAGPGDNVGFNVKNVSVKELKRGFVC 578138 Score = 44.3 bits (103), Expect = 1e-04 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 22/238 (9%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGG--AQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVL 145 +T D GH ++T + G A D M+V+ + +G+ + E I + VV Sbjct: 189915 ITFCDLAGHEKYLKTTMFGLTAHAPDYCMMVVALNQGVLRMTQEHFAIALALKIPVFVVF 190094 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205 +K DL P + I MT+ L+++ R P++ +P Sbjct: 190095 SKSDLAPANVAEHTISVMTRM----LKSSGARKIPVLVNSLDEVSICARNIPNDRMVPMF 190262 Query: 206 I---------ELLTSQISI-------PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGS 249 + +LL + +++ R S +VD FS+ G GTV++G L G Sbjct: 190263 VVSNVTGAGLDLLRAFLNLLPWRHDWNERKKSAFAEFTVDDHFSVPGVGTVVSGVCLRGV 190442 Query: 250 ISLGDSVEIPALK----VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 + G SV + + +KS+ +P+ G + + + + + +G+V Sbjct: 190443 LQQGQSVFLGPDRHGHFARIAIKSIHYKRVPVQRLYAGQSGSLALKKIRRERVRKGMV 190616 >dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete sequence Length = 908485 Score = 70.1 bits (170), Expect = 2e-12 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 23/233 (9%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVL 145 V+ VDCPGH L+ T++ GA ++D +L+I + Q Q++E L ++ + ++V Sbjct: 765562 VSFVDCPGHDILMATMLNGAAVMDAALLIIAGNESCPQPQTSEHLAAVEVMQLRSIIVCQ 765383 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205 NKIDL+ E +A ++++ + T API+P+ + + Sbjct: 765382 NKIDLVDE----SAARTQYEQIKNFIRGTVAEQAPIVPI----------SAQLRYNVDVV 765245 Query: 206 IELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSVE 257 +E L + +P RD P M + F + +G V G+I+ G + +GD +E Sbjct: 765244 VEYLIKHVPVPRRDFVSPPRMIIIRSFDVNKPGEDVENLRGGVAGGSIMQGVLRVGDLIE 765065 Query: 258 I-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL 297 I P + ++ K+ SM + A+ G +G+ T+ DP L Sbjct: 765064 IRPGITIKDAEGNFKCQPIISKIVSMHAERNELQYAVPGGLIGV-GTKIDPTL 764909 >dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete sequence Length = 481791 Score = 48.1 bits (113), Expect = 1e-05 Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 14/235 (5%) Frame = -2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAECLVIGQIA-CQ 139 +T++D PGH + + +I G D+ +LVI KG Q+ E ++ + A + Sbjct: 352763 ITIIDAPGHKAYVPAMISGTGQADVAILVISARKGEFEAGFERGGQTREHAMLAKTAGVR 352584 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXX 197 +L+VV+NK+D + ++ K+ L+ +R + +PV Sbjct: 352583 QLIVVINKMDEPTVQWSEERFREICDKLAPFLKQIGYRPQEVSWVPVSGFTGENLREPVH 352404 Query: 198 XXXXI----PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLG 253 L+++L + + +P R P M+V F + G + G + +G+I G Sbjct: 352403 PSTCAWYKGGSLLQVLDA-LKLPPRPLDMPVRMTVVDRF--RDMGVCILGRVEAGTIRSG 352233 Query: 254 DSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPES 308 D + + ++V V S+ M + A GD + + V + + G V E+ Sbjct: 352232 DRLLLMPPRLVVHVTSITMDAEEVPLAEPGDNVKLLVKGVEEDDIHSGQVLCAEN 352068 >dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete sequence Length = 859119 Score = 48.1 bits (113), Expect = 1e-05 Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 14/235 (5%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAECLVIGQIA-CQ 139 +T++D PGH + + +I G D+ +LVI KG Q+ E ++ + A + Sbjct: 668650 ITIIDAPGHKAYVPAMISGTGQADVAILVISARKGEFEAGFERGGQTREHAMLAKTAGVR 668829 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXX 197 +L+VV+NK+D + ++ K+ L+ +R + +PV Sbjct: 668830 QLIVVINKMDEPTVQWSEERFREICDKLAPFLKQIGYRPQEVSWVPVSGFTGENLREPVH 669009 Query: 198 XXXXI----PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLG 253 L+++L + + +P R P M+V F + G + G + +G+I G Sbjct: 669010 PSTCAWYKGGSLLQVLDA-LKLPPRPLDMPVRMTVVDRF--RDMGVCILGRVEAGTIRSG 669180 Query: 254 DSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPES 308 D + + ++V V S+ M + A GD + + V + + G V E+ Sbjct: 669181 DRLLLMPPRLVVHVTSITMDAEEVPLAEPGDNVKLLVKGVEEDDIHSGQVLCAEN 669345 Score = 44.7 bits (104), Expect = 1e-04 Identities = 19/62 (30%), Positives = 36/62 (58%) Frame = -3 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LV+D+ G++ Q+ E + + ++ +V LNK+D Sbjct: 372466 IIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTLESIELLKMRKTPFIVALNKVD 372287 Query: 150 LL 151 L Sbjct: 372286 RL 372281 >dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete sequence Length = 852849 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 VTL+D PGHA ++ GA + D ++LV+D +G+ + + + L++VL + Sbjct: 570813 VTLMDAPGHADFFDQVVVGATLADAVLLVVDSAEGVLLGTERVVALALEMSLPLILVLTQ 570634 Query: 148 IDLL 151 +D L Sbjct: 570633 LDRL 570622 Score = 42.7 bits (99), Expect = 4e-04 Identities = 20/62 (32%), Positives = 33/62 (53%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 +T +D PGH + GA + D+++LVI G+ Q+ E + + A ++V LNK Sbjct: 624991 ITFLDTPGHEAFTEMRARGASVTDIVVLVIAADDGVMPQTLEAIHHARAAAVPIIVALNK 624812 Query: 148 ID 149 D Sbjct: 624811 CD 624806 >dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, complete genome, complete sequence Length = 457013 Score = 42.7 bits (99), Expect = 4e-04 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%) Frame = -3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 D + R+ G+T+D+ S P ++ +DCPGH Sbjct: 257955 DSEQSERQHGVTVDMAIRQASPP-----------------------DGTFTISFLDCPGH 257845 Query: 97 ASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAE---------CLVIGQIACQKLVVVLNK 147 + + GA + DL +LVID G + E ++ + ++LVV +NK Sbjct: 257844 QDFVLAFLRGAFLADLGVLVIDARPGASDWAIEDERGQTRRHAQILRHVGVEQLVVAINK 257665 Query: 148 ID 149 +D Sbjct: 257664 MD 257659 >dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete sequence Length = 810151 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/64 (34%), Positives = 36/64 (56%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 VTL+D PGH + A++ D ++V+DV +G+ +Q+ L + ++VLNK Sbjct: 287375 VTLLDSPGHVDFAAEVSAAARLSDGSLIVVDVVEGVCSQTRTVLRQALSEGLQPILVLNK 287196 Query: 148 IDLL 151 ID L Sbjct: 287195 IDRL 287184 >dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, complete genome, complete sequence Length = 513455 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + Q + +L++D TKG++ Q+ + ++V +LNK Sbjct: 61593 LNLIDTPGHVDFSYEVSRSLQACEGALLLVDATKGVEAQTLANAYLAMENNLEIVPILNK 61414 Query: 148 IDLLPEGKRQAA 159 IDL QA+ Sbjct: 61413 IDLPAAQPEQAS 61378 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,129,584 Number of Sequences: 20 Number of extensions: 147547 Number of successful extensions: 736 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 619 Number of HSP's gapped (non-prelim): 329 length of query: 596 length of database: 5,515,582 effective HSP length: 101 effective length of query: 495 effective length of database: 5,513,562 effective search space: 2729213190 effective search space used: 2729213190 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (28.1 bits)