TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01001454.1| Hyaloperonospora parasitica strain Emoy2 v-7....   107   5e-48
gb|ABWE01000154.1| Hyaloperonospora parasitica strain Emoy2 v-7....    60   4e-11
gb|ABWE01001560.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   5.1  

>gb|ABWE01001454.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont60.4, whole genome
             shotgun sequence
          Length = 13529

 Score =  107 bits (267), Expect(4) = 5e-48
 Identities = 46/81 (56%), Positives = 62/81 (76%)
 Frame = -3

Query: 249   HIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK 308
             H++NNAYGVQ+S C+H I    R+GR+DA VQSLDKNF+VPVGGAI+   +   +  ++K
Sbjct: 13005 HVINNAYGVQASACVHQIDLAMRIGRVDAVVQSLDKNFLVPVGGAIVCSTSSEIVDSVAK 12826

Query: 309   MYPGRASASPSLDVLITLLSL 329
              YPGRASA+P+LD  IT+L +
Sbjct: 12825 FYPGRASATPALDFFITMLQM 12763



 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = -2

Query: 150   LCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL 193
             L  L L+  RP A+Y+IWPR+DQKSCFK+++ AG  P+V+ N L
Sbjct: 13402 LVLLQLKKTRPAARYVIWPRVDQKSCFKAILAAGLTPLVLANCL 13271



 Score = 55.8 bits (133), Expect(4) = 5e-48
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
 Frame = -1

Query: 107   KAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLT--------LRHK 158
             KAAGSSLL ++ N+L  D+++LAG+  V   +      G        T        LRH 
Sbjct: 13529 KAAGSSLLVQLANALAKDVLRLAGLRAVQAHWCCL*RLGCRYAGAAATEKDKTRGALRHL 13350

Query: 159   RPKAKYIIWP-----RIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELG 213
                   I++      R D  S  K + + G   +          L+TDL  + A + + G
Sbjct: 13349 ASGRPEILFQGHFGGRTDATSAGK-LFSRGR*SL-------WGVLKTDLVGMAALMDQYG 13194

Query: 214   PDCILCIHSTTSCFAPRVPDRLEELAVICANYDI 247
              + IL + STTSCFAPR  D ++E+A +C   +I
Sbjct: 13193 SESILAVSSTTSCFAPRAYDAVKEIAQLCQERNI 13092



 Score = 46.6 bits (109), Expect(4) = 5e-48
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 29/104 (27%)
 Frame = -1

Query: 330   GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNP------------------- 370
             G NGY++LL+ERK + +Y+  +++ L+    E +L    N                    
Sbjct: 12677 GKNGYRRLLEERKHLAAYMREKLEVLAAEEGEHVLKVSTNEVGTIELKLRQCWFSDRLTF 12498

Query: 371   ----ISLAMTLKTL------DEHRDKAVTQLGSMLFTRQVSGAR 404
                 IS AMTL T        + + + +T LG+MLF+R V GAR
Sbjct: 12497 VRA*ISYAMTLATFCSEVEDRQEKSRRLTLLGAMLFSRGVCGAR 12366



 Score = 42.7 bits (99), Expect(4) = 5e-48
 Identities = 19/63 (30%), Positives = 37/63 (58%)
 Frame = -3

Query: 404   RVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463
             RVV     + ++GY F  F +H + +P AY+  A  +GM+  +VD+ + +L + +   RK
Sbjct: 12297 RVVSCLDSKCIAGYEFDSFGAHYDEFPVAYVTFACVLGMQKTEVDMLMTKLRKTIHDWRK 12118

Query: 464   ERS 466
             +++
Sbjct: 12117 KQN 12109


>gb|ABWE01000154.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont60.5, whole
           genome shotgun sequence
          Length = 69632

 Score = 59.7 bits (143), Expect(2) = 4e-11
 Identities = 29/72 (40%), Positives = 45/72 (62%)
 Frame = -2

Query: 1   MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60
           M+ ++ A  E+LV   YV+QG  A RS   L+  LL +   P++GWD++++E+ L  L+ 
Sbjct: 277 MDSKTAALAEQLVPATYVQQGLAAIRSRHKLVSTLLAQRCLPDDGWDDTSVEMLLQTLSA 98

Query: 61  MDSNNFLGNCGV 72
           MDSNNF    G+
Sbjct: 97  MDSNNFRAAYGL 62



 Score = 27.7 bits (60), Expect(2) = 4e-11
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 73 GEREGRVASALVARRHYRF 91
          GER  RV S LVARRH+ F
Sbjct: 62 GER*ARVFSTLVARRHFGF 6


>gb|ABWE01001560.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont259.3, whole
            genome shotgun sequence
          Length = 11960

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = +2

Query: 89   YRFIHGIGRSGDISAVQPKAAGSSLLNKITN-----SLVLDIIKLAGVHTVANCFVVPMA 143
            YRF   +GR G    ++  + G + L  +TN      L  ++I    V   ANC +  + 
Sbjct: 8834 YRF-PALGRDG--RRLKRGSKGRTRLPPLTNLTGPNELAHELILAGPVQVAANCEICFLT 9004

Query: 144  TGMSLTLCFLTLRHKRPKAKYIIW 167
            T MS   C +TL H       +IW
Sbjct: 9005 TTMSTNRCVVTLIHDTQS*ITMIW 9076


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,039,385
Number of Sequences: 5422
Number of extensions: 541719
Number of successful extensions: 2769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 2331
Number of HSP's gapped (non-prelim): 826
length of query: 501
length of database: 22,486,378
effective HSP length: 110
effective length of query: 391
effective length of database: 21,889,958
effective search space: 8558973578
effective search space used: 8558973578
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)