TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.13 of Capsaspora owczarzaki ATCC 30864                  157   1e-78
supercontig_1.4 of Capsaspora owczarzaki ATCC 30864                    29   8.4  

>supercontig_1.13 of Capsaspora owczarzaki ATCC 30864
          Length = 955311

 Score =  157 bits (396), Expect(2) = 1e-78
 Identities = 85/192 (44%), Positives = 110/192 (57%), Gaps = 47/192 (24%)
 Frame = +2

Query: 90     RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAG------------------- 130
              R  HGIGRSGDI+A+QPKAAGSSL+ K+ N + LD+I+LAG                   
Sbjct: 800303 RMAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRLAGMILCHTVWQHEDQSEIRRK 800482

Query: 131    ---------------------------VHTVANCFVVPMATGMSLTLCFLTLRHKRP-KA 162
                                         VH    C  +P+ATGM++ +  LTL   RP  A
Sbjct: 800483 WTSFLTTSQQPTHNLKQLTIQ*SHWTGVHAANACIALPLATGMAMVMTLLTLAQTRPPSA 800662

Query: 163    KYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHS 222
              + ++W RIDQKSC K++   GFE VV++N +EGDE+RTDL A++ +V  +G D ILCI S
Sbjct: 800663 RKVLWLRIDQKSCIKAITACGFEVVVVDNAIEGDEVRTDLSALQHQVNTVGKDNILCIVS 800842

Query: 223    TTSCFAPRVPDR 234
              TTSCFAPR PDR
Sbjct: 800843 TTSCFAPRCPDR 800878



 Score =  155 bits (392), Expect(2) = 1e-78
 Identities = 112/310 (36%), Positives = 148/310 (47%), Gaps = 84/310 (27%)
 Frame = +3

Query: 237    ELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIA 296
              E+A ICA   IPH++NNAYG+QSSK   LIQ   + GR+DAFVQS DKN MVPVGGA++A
Sbjct: 800979 EIAKICATESIPHVINNAYGIQSSKITALIQDAHKAGRVDAFVQSSDKNLMVPVGGALVA 801158

Query: 297    GFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMF----------- 345
              G + +FI+ I +MYPGRASA+PS+D+ ITLLS+G  G++ LLK+RK  +           
Sbjct: 801159 GHDRAFIKRIGEMYPGRASAAPSVDIFITLLSMGQQGFRSLLKQRKVTWILALEFCGFIL 801338

Query: 346    --------------------SYLSNQIKKLSEAYNE--RLLHTPHN-----PISLAMTLK 378
                                  S+  N  +  S   N   + L  P +     P  +A TL+
Sbjct: 801339 HTSAQLIYEC*IVLYRLCLNSFEQNSARLPSAKVNGCWKPLTIPFHSV*FKPPLVA*TLR 801518

Query: 379    TLDEH---RDKAV---------TQLGSMLFTRQVSGARVV-------------------- 406
                  H   R  A+         T+LGS LFTR VSG R                      
Sbjct: 801519 CKSPHLCFRPIAITLSTFGSDATRLGSFLFTRCVSGTRCAVALAPGIVLASCL*FSFTHF 801698

Query: 407    --------------PLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIK 452
                               +  +V   +   F +H + Y  AYL AA+AIGM  Q+VD  I 
Sbjct: 801699 HLEFCIYCSVVAADRAAATTSVGPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVDALID 801878

Query: 453    RLDRCLKAVR 462
              RL    K +R
Sbjct: 801879 RLTAAFKDLR 801908



 Score = 42.4 bits (98), Expect(2) = 5e-09
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +1

Query: 35     LLEKGKCPENGWDESTLELFLHELAIMDSNNFLG 68
              L  + K PE GWDE ++EL L +LA MDSNNF G
Sbjct: 799918 LSRQRKWPELGWDEMSIELLLSDLAQMDSNNFPG 800019



 Score = 36.6 bits (83), Expect(2) = 5e-09
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +3

Query: 67     LGNCGVGEREGRVASALVARRHYR 90
              L N G GERE RV S LVARRH+R
Sbjct: 800091 LANIGAGEREARVYSDLVARRHFR 800162


>supercontig_1.4 of Capsaspora owczarzaki ATCC 30864
          Length = 2141673

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 339    KERKEMFSYLSNQIKKLSEAYNERLLHTPHN 369
              K++K+  + +  Q KK ++ YN RL+  PH+
Sbjct: 454998 KKKKKKKTSMQTQYKKTNKTYNLRLMRVPHS 455090


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,111,948
Number of Sequences: 89
Number of extensions: 248363
Number of successful extensions: 1496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 465
length of query: 501
length of database: 9,347,932
effective HSP length: 104
effective length of query: 397
effective length of database: 9,338,676
effective search space: 3707454372
effective search space used: 3707454372
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)