T-COFFEE, Version_8.99(Thu Feb 17 19:24:49 CET 2011 - Revision 594)
Cedric Notredame
CPU TIME:0 sec.
SCORE=91
*
BAD AVG GOOD
*
sbp2 : 90
sbp2uniotRNA : 92
B.hom : 67
C.mur : 93
C.par : 93
N.gru : 92
P.pal : 93
P.tri : 91
P.ult : 91
S.par : 93
T.tra : 92
cons : 91
sbp2 1 MASEGPREPESEGIKLSADVKPFVPRFAGLNVAWLE 36
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 1 36
sbp2 37 SSEACVFPSSAATYYPFVQEPPVTEQKIYTEDMAFG 72
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 37 72
sbp2 73 ASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPG 108
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 73 108
sbp2 109 SQYLYNQPSCYRGFQTVKHRNENTCPLPQEMKALFK 144
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 109 144
sbp2 145 KKTYDEKKTYDQQKFDSERADGTISSEIKSARGSHH 180
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 145 180
sbp2 181 LSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEF 216
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 181 216
sbp2 217 EFTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDI 252
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 217 252
sbp2 253 SLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNS 288
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 253 288
sbp2 289 PSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMIN 324
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 289 324
sbp2 325 LKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHP 360
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 325 360
sbp2 361 TQKSKASQGSDLEQNEASRKNKKKKEKSTSKYEVLT 396
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 361 396
sbp2 397 VQEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQ 432
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 397 432
sbp2 433 PQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHA 468
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 433 468
sbp2 469 KQSSKPVVVSVGAVPVLSKECASGERGRRMSQMKTP 504
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 469 504
sbp2 505 HNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKER 540
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 505 540
sbp2 541 QERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQA 576
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 541 576
sbp2 577 ELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEAS 612
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 ------------------------------------ 0
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 577 612
sbp2 613 HLAPNHTTFPKIHSRRFRDYCSQMLSKEVDACVTDL 648
sbp2uniotRNA 1 ------------------------------------ 0
B.hom 1 -----------------QKRGKE------------- 6
C.mur 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 --------------RKIREYVNYPLDPDYENIIFQM 22
P.pal 1 -----------------QEYMNQVCTKEIDDTAREF 19
P.tri 1 -----------------RPYATLISDESVKPLLTEM 19
P.ult 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 -----------------REYVDQLVPPELNRLIPPM 19
cons 613 648
sbp2 649 LKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHL 684
sbp2uniotRNA 1 --------DRMYQKDPVKAKTKRRLVLGLREVLKHL 28
B.hom 7 ----AG-------------------TKKKAEEEKTK 19
C.mur 1 ----------------------RVFTVGVREAMRCL 14
C.par 1 ----------------------RVFTVGVREAMRCL 14
N.gru 23 LTKLQFYQFRLKKTDKKKFKQRLRYVIGIREVLKGL 58
P.pal 20 IVKIKQFQDNYALKNPD--KPKKRFITGLREIERAA 53
P.tri 20 FGELMRLQKRAVDENN--TKVKRRLVMGLREVARGI 53
P.ult 1 ------LQERAHHQNSLQDKRSRRLVLGLHEVKRGV 30
S.par 1 --------------NPLKAKKTRRLVFGLREVKRGL 22
T.tra 20 LKELSRLQERARVLNPTKA--KRRLVTGLREVVKFV 53
cons 649 * : 684
sbp2 685 KLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACE 720
sbp2uniotRNA 29 KLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYACE 64
B.hom 20 KRKREEAMVLESDSEESSEEMEEEEEEEEEKAAAEE 55
C.mur 15 RHKKLQALIVAPDIEGGDIEGGLRHHVIHILMQAQE 50
C.par 15 RHKKLKALIVAPDIEGDGVEGSLRHHVIHILLQAQE 50
N.gru 59 KLKHIRAVVIAPNIDKVTTPGGLDTKIEEIIQKCNE 94
P.pal 54 DCGKLSAVIIAPNIEDINCPGGLNESIKSIIRLCRS 89
P.tri 54 RSHKVKLVAMANNLDD---YGAIDEKLQEILDLADE 86
P.ult 31 LAKKICLLIVGTDIEQCD---VLDEKLDEILAIATK 63
S.par 23 KNLKVMCLLVAYDVDECAAEGGLDDKIVELIDLARA 58
T.tra 54 KVGTAKAVIVAPDIEKVEADGGLDDKIAFIRTRAAE 89
cons 685 : : : : . 720
sbp2 721 QNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 756
sbp2uniotRNA 65 QNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 100
B.hom 56 EELDRSETSKEKKERNTMNETAKK------------ 79
C.mur 51 FNIPVIFALNRHRIGRAMGKHMRMSVLGLLSTRGVE 86
C.par 51 LNIPTIFALNRHRIGRAMGKHMRMSVLGLLSIRGVE 86
N.gru 95 QELPVFFALTKKKLGTAMKTSTKISLVGLYSMDGAF 130
P.pal 90 KQLLYTFALSRRIIGRLINVHIKVSAFGILFHDGAE 125
P.tri 87 NEVPIFYEFTKRALGKVMGKTVKIAVVGVQNAEGAH 122
P.ult 64 QEVPIIYPMSRRKLGRVLSKSVRVSCVGVYSMEGAN 99
S.par 59 NKIPVVFALSKRKLGKAVLKTIRVSCVGIYSVDGAN 94
T.tra 90 LGIPLVYALSRNRLGRAMGRKLKISVAAILFYDGVN 125
cons 721 : ... : 756
sbp2 757 DQFHKMVELTVAARQAYKTMLENVQQELVGEPRPQA 792
sbp2uniotRNA 101 ------------------------------------ 100
B.hom 80 ------------------------------------ 79
C.mur 87 RQFQTVAHTAKVLQRLYNF----------------- 105
C.par 87 KQFQAISHTAQLLRKLYHF----------------- 105
N.gru 131 DEFKKAK----------------------------- 137
P.pal 126 DIYNRLSKLTLASRDTFRKQQ--------------- 146
P.tri 123 QQFKKLLAI--------------------------- 131
P.ult 100 DLFQDI------------------------------ 105
S.par 95 DMWASVQKTV-------------------------- 104
T.tra 126 TEFNRMVELADEGRAAF------------------- 142
cons 757 792
sbp2 793 PPSLPTQGPSCPAEDGPPALKEKEEPHYIEIWKKHL 828
sbp2uniotRNA 101 ------------------------------------ 100
B.hom 80 ------------------------------------ 79
C.mur 106 ------------------------------------ 105
C.par 106 ------------------------------------ 105
N.gru 138 ------------------------------------ 137
P.pal 147 ------------------------------------ 146
P.tri 132 ------------------------------------ 131
P.ult 106 ------------------------------------ 105
S.par 105 ------------------------------------ 104
T.tra 143 ------------------------------------ 142
cons 793 828
sbp2 829 EAYSGCTLELEESLEASTSQMMNLNL 854
sbp2uniotRNA 101 -------------------------D 101
B.hom 80 ---------------------EMPSQ 84
C.mur 106 ----------------------CIEH 109
C.par 106 ----------------------CIEN 109
N.gru 138 ------------------------QI 139
P.pal 147 ---------------------QQVQQ 151
P.tri 132 ----------------------STKA 135
P.ult 106 ------------------------LK 107
S.par 105 ----------------------ASLQ 108
T.tra 143 ----------------------DAAL 146
cons 829 854