T-COFFEE, Version_8.99(Thu Feb 17 19:24:49 CET 2011 - Revision 594)
Cedric Notredame
CPU TIME:0 sec.
SCORE=95
*
BAD AVG GOOD
*
sbp2 : 94
sbp2uniotRNA : 96
C.muris : 97
C.owc : 94
C.par : 97
N.gru : 95
P.pal : 94
P.tri : 93
S.par : 95
T.tra : 95
cons : 95
sbp2 1 MASEGPREPESEGIKLSADVKPFVPRFAGLNVAWLE 36
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 1 36
sbp2 37 SSEACVFPSSAATYYPFVQEPPVTEQKIYTEDMAFG 72
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 37 72
sbp2 73 ASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPG 108
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 73 108
sbp2 109 SQYLYNQPSCYRGFQTVKHRNENTCPLPQEMKALFK 144
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 109 144
sbp2 145 KKTYDEKKTYDQQKFDSERADGTISSEIKSARGSHH 180
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 145 180
sbp2 181 LSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEF 216
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 181 216
sbp2 217 EFTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDI 252
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 217 252
sbp2 253 SLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNS 288
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 253 288
sbp2 289 PSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMIN 324
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 289 324
sbp2 325 LKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHP 360
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 325 360
sbp2 361 TQKSKASQGSDLEQNEASRKNKKKKEKSTSKYEVLT 396
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 361 396
sbp2 397 VQEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQ 432
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 397 432
sbp2 433 PQDNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHA 468
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 433 468
sbp2 469 KQSSKPVVVSVGAVPVLSKECASGERGRRMSQMKTP 504
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 469 504
sbp2 505 HNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKER 540
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 505 540
sbp2 541 QERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQA 576
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 541 576
sbp2 577 ELSGPEGMDELISTPSVEDKSEEPPGTELQRDTEAS 612
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 ------------------------------------ 0
C.par 1 ------------------------------------ 0
N.gru 1 ------------------------------------ 0
P.pal 1 ------------------------------------ 0
P.tri 1 ------------------------------------ 0
S.par 1 ------------------------------------ 0
T.tra 1 ------------------------------------ 0
cons 577 612
sbp2 613 HLAPNHTTFPKIHSRRFRDYCSQMLSKEVDACVTDL 648
sbp2uniotRNA 1 ------------------------------------ 0
C.muris 1 ------------------------------------ 0
C.owc 1 -------------------YCSQKVGAELDSATAIV 17
C.par 1 ------------------------------------ 0
N.gru 1 ------------NERKIREYVNYPLDPDYENIIFQM 24
P.pal 1 -----------------QEYMNQVCTKEIDDTAREF 19
P.tri 1 -----------------RPYATLISDESVKPLLTEM 19
S.par 1 ------------------------------------ 0
T.tra 1 -----------------REYVDQLVPPELNRLIPPM 19
cons 613 648
sbp2 649 LKELVRFQD-RMYQKDPVKAKTKRRLVLGLREVLKH 683
sbp2uniotRNA 1 --------D-RMYQKDPVKAKTKRRLVLGLREVLKH 27
C.muris 1 -----------------------RVFTVGVREAMRC 13
C.owc 18 LKQLHKFQERRLATIDPNKAKQRRWFVVGLKEVFKH 53
C.par 1 -----------------------RVFTVGVREAMRC 13
N.gru 25 LTKLQFYQF-RLKKTDKKKFKQRLRYVIGIREVLKG 59
P.pal 20 IVKIKQFQD-NYALKNPDKP--KKRFITGLREIERA 52
P.tri 20 FGELMRLQK-RAV--DENNTKVKRRLVMGLREVARG 52
S.par 1 --------E-RARLTNPLKAKKTRRLVFGLREVKRG 27
T.tra 20 LKELSRLQE-RARVLNPTKAK--RRLVTGLREVVKF 52
cons 649 *::* : 684
sbp2 684 LKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYAC 719
sbp2uniotRNA 28 LKLKKLKCVIISPNCEKIQSKGGLDDTLHTIIDYAC 63
C.muris 14 LRHKKLQALIVAPDIEGGDIEGGLRHHVIHILMQAQ 49
C.owc 54 LQRGKLRCLIVAPDIESVRSAGGLDDAISSILTEAH 89
C.par 14 LRHKKLKALIVAPDIEGDGVEGSLRHHVIHILLQAQ 49
N.gru 60 LKLKHIRAVVIAPNIDKVTTPGGLDTKIEEIIQKCN 95
P.pal 53 ADCGKLSAVIIAPNIEDINCPGGLNESIKSIIRLCR 88
P.tri 53 IRSHKVKLVAMANNLDD---YGAIDEKLQEILDLAD 85
S.par 28 LKNLKVMCLLVAYDVDECAAEGGLDDKIVELIDLAR 63
T.tra 53 VKVGTAKAVIVAPDIEKVEADGGLDDKIAFIRTRAA 88
cons 685 : :: : : *.: : : . 720
sbp2 720 EQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGA 755
sbp2uniotRNA 64 EQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGA 99
C.muris 50 EFNIPVIFALNRHRIGRAMGKHMRMSVLGLLSTRGV 85
C.owc 90 AQDRPVVFALNRRKIARALNIHVPVSAVGIFTFDGL 125
C.par 50 ELNIPTIFALNRHRIGRAMGKHMRMSVLGLLSIRGV 85
N.gru 96 EQELPVFFALTKKKLGTAMKTSTKISLVGLYSMDGA 131
P.pal 89 SKQLLYTFALSRRIIGRLINVHIKVSAFGILFHDGA 124
P.tri 86 ENEVPIFYEFTKRALGKVMGKTVKIAVVGVQNAEGA 121
S.par 64 ANKIPVVFALSKYDIGRATN---------------- 83
T.tra 89 ELGIPLVYALSRNRLGRAMGRKLKISVAAILFYDGV 124
cons 721 : :.: :. 756
sbp2 756 QDQFHKMVELTVAARQAYKTMLENVQQELVGEPRPQ 791
sbp2uniotRNA 100 Q----------------------------------- 100
C.muris 86 ERQFQTVAHTAKVLQRLYNFC--------------- 106
C.owc 126 HQEYKSMLLQSTEGRLAYFAMLEATHAQWVETPP-- 159
C.par 86 EKQFQAISHTAQLLRKLYHFC--------------- 106
N.gru 132 FDEFKKAK---------------------------- 139
P.pal 125 EDIYNRLSKLTLASRDTFRKQQQQ------------ 148
P.tri 122 HQQFKKLLAIS------------------------- 132
S.par 84 ------------------------------------ 83
T.tra 125 NTEFNRMVELADEGRAAFD----------------- 143
cons 757 792
sbp2 792 APPSLPTQGPSCPAEDGPPALKEKEEPHYIEIWKKH 827
sbp2uniotRNA 101 ------------------------------------ 100
C.muris 107 ------------------------------------ 106
C.owc 160 ------------------------------------ 159
C.par 107 ------------------------------------ 106
N.gru 140 ------------------------------------ 139
P.pal 149 ------------------------------------ 148
P.tri 133 ------------------------------------ 132
S.par 84 ------------------------------------ 83
T.tra 144 ------------------------------------ 143
cons 793 828
sbp2 828 LEAYSGCTLELEESLEASTSQMMNLNL 854
sbp2uniotRNA 101 --------------------------D 101
C.muris 107 ------------------------IEH 109
C.owc 160 ------------------------PTA 162
C.par 107 ------------------------IEN 109
N.gru 140 -------------------------QI 141
P.pal 149 ------------------------VQQ 151
P.tri 133 ------------------------TKA 135
S.par 84 --------------------------Q 84
T.tra 144 ------------------------AAL 146
cons 829 855