T-COFFEE, Version_8.99(Thu Feb 17 19:24:49 CET 2011 - Revision 594)
Cedric Notredame 
CPU TIME:5 sec.
SCORE=93
*
 BAD AVG GOOD
*
eEFSec          :  93
eEFSec_GTP_     :  93
eEFSec_DomII_   :  97
B.hom           :  94
C.mer           :  96
C.owc           :  92
E.sil           :  93
H.ara           :  90
N.gru           :  93
P.pal           :  95
P.tri           :  93
P.ult           :  91
S.par           :  93
T.tra           :  93
cons            :  93

eEFSec              1 MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAF   36 
eEFSec_GTP_         1 ------------LGHIDSGKTALARALSTTASTAAF   24 
eEFSec_DomII_       1 ------------------------------------    0 
B.hom               1 ------NINVGVMGHVDSGKTSLVKSLSAILSTASL   30 
C.mer               1 ---RFLNINVAVMGHVDVGKTTLVRFLSEILSTAAL   33 
C.owc               1 ---RVLNVNLGVLGHIDSGKTALAKALSTVASTAAF   33 
E.sil               1 -----LNINVGILGHVDSGKTSLVKALSTVLSTASL   31 
H.ara               1 -----VNVNVGVLGHVDSGKTSLVRALSTHLSTAAL   31 
N.gru               1 ---RILNVNVGILGHVDSGKTSLCKALSTHASTAAF   33 
P.pal               1 ---KPLNINIGIMGHVDSGKTSLAKALSTSLSTAAL   33 
P.tri               1 -----LNVNLGVLGHVDSGKTSLVKALSTLLSTAAL   31 
P.ult               1 -----VNVNVGVLGHVDSGKTSLVRVLSTQLSTAAL   31 
S.par               1 -----VNVNVGILGHVDSGKTSLVRSLSTHLSTAAL   31 
T.tra               1 A-SRVLNVNVGLLGHVDSGKTSLAKALSTLASTAAF   35 

cons                1                                        36 


eEFSec             37 DKQPQSRERGITLDLGFSCFSV-PLPARLRSSLPEF   71 
eEFSec_GTP_        25 DKQPQSRERGITLDLGFSCFSV-PLPARLRSSLPEF   59 
eEFSec_DomII_       1 ------------------------------------    0 
B.hom              31 DKNPQSRQRGITLDLGFSAFLS-DIPSHIS------   59 
C.mer              34 DKHPASRELGRTIDLGFSCTRL-PASPVVVQLVDDE   68 
C.owc              34 DKNPQSQARGITLDLGFSSLSVTPMPEH--------   61 
E.sil              32 DKNPQSRERGITLDLGFSAFTV-SLPEHLPHLTGHE   66 
H.ara              32 DKSPQSQRRGITLDLGFSSFRL-DIGPS--------   58 
N.gru              34 DKSPQSKERGITQDLGFSAF----------------   53 
P.pal              34 DKSPASQERGITLDLGFSAFHS-ELPDRLK------   62 
P.tri              32 DKSKQSRQRGMTLDLGFSCFFL-DMPSHLQASYP--   64 
P.ult              32 DKHPQSQQRGITLDLGFSAFRV-P------------   54 
S.par              32 DKNPQSKARGITLDLGFSSLQL-PFT----------   56 
T.tra              36 DKHPQSQVRGITLDLGFSALRV-PLPPA--------   62 

cons               37                                        72 


eEFSec             72 QAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGA  107 
eEFSec_GTP_        60 QAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGA   95 
eEFSec_DomII_       1 ------------------------------------    0 
B.hom              60 -------------SIQYTLVDCPGHASLIRTILGGA   82 
C.mer              69 AASLE---NVSYEGLQLTWIDCPGHASLLRTVLLGA  101 
C.owc              62 -------------LLQFTLVDCPGHADLIRTIIGGA   84 
E.sil              67 VFAPPSTAAAFTRTLPTRQVDCPGHASLIRTIIGGA  102 
H.ara              59 -------------FLQVTLVDCPGHTSLFQTVLGGA   81 
N.gru              54 --------------IQYTLVDCPGHASLIRTIIGGA   75 
P.pal              63 -------------SIQYTLVDCPGHASLIKTIIGGS   85 
P.tri              65 --------DPDKKNLQITLVDCPGHASLIRTIIGGA   92 
P.ult              55 --------------IQITLVDCPGHASLFKTILGGA   76 
S.par              57 --------------AQLTLVDCPGHASLIKTVIGGA   78 
T.tra              63 -------------LIQFTLVDCPGHASLIKTIIGGA   85 

cons               73                                       108 


eEFSec            108 QIIDLMMLVIDVTKGMQTQSAECLVIGQIAC---QK  140 
eEFSec_GTP_        96 QIIDLMMLVIDVTKGMQTQSAECLVIGQIAC---QK  128 
eEFSec_DomII_       1 ------------------------------------    0 
B.hom              83 QIIDMLIIVIDCLKGIQAQTAECIVIGEITT---NK  115 
C.mer             102 SVMDLLLLVVDASAGIQAQTLECLALAAIFT---KH  134 
C.owc              85 QIIDMMMLVVDVNKGIQTQTAECLVIGEIMC---DI  117 
E.sil             103 QIMDMMLLVVDATKGIQAQTTECVVIGEAVMSSGAD  138 
H.ara              82 AIIDTVVLVTDCRKGLEAQTIESLLLASLVCP--RK  115 
N.gru              76 QIIDFMVLVIDAVKGVQTQTAECIVIGEISC---NN  108 
P.pal              86 QIIDMMFLVIDITKGIQTQTAECIVIGEITC---KK  118 
P.tri              93 QIIDMVLLVVDAVKGWQAQTTECLVLAELTS---PY  125 
P.ult              77 RIIDMVLLVVDAQKGLQPQTIESLLVAELAVA--HH  110 
S.par              79 HIIDMALLVIDAVKGIQMQTIESTVLAEIAT---SH  111 
T.tra              86 SIIDIMVLVVDAKAGFQTQTAECLVIGELTA---DT  118 

cons              109                                       144 


eEFSec            141 LVVVLNKIDLL-PE--GKRQAAIDKMTKKMQK-TLE  172 
eEFSec_GTP_       129 LVVVLNKIDLL-PE--GKRQAAIDKMTKKMQK-TLE  160 
eEFSec_DomII_       1 ------------------------------------    0 
B.hom             116 AIIALNKIDLI-PE--AERSDRIKTVISSLQK-TLS  147 
C.mer             135 VVVALHKC----------------------------  142 
C.owc             118 LVVALNKIDQI-PE--DQRAQTIEKVTRGLAK-TFA  149 
E.sil             139 VIVVLNKVDLI-PE--QERKARLRQAETEIAA-QLA  170 
H.ara             116 LVIVLTKTDLL-SALDVERAAAIGAVTSEVQT-FVA  149 
N.gru             109 LIVALNKVDMI-PA--DQREDRVDKIKKSLIKNVFS  141 
P.pal             119 AIVVLNKIDQL-PI--ESRQNKID------------  139 
P.tri             126 LVVALNKADQF-PP--PERDQLLEQAAAKIRD-RLK  157 
P.ult             111 VVIALNKVDLLLPE--SEREVRIRSLETEIQR-VLD  143 
S.par             112 VIVVLNKVDLL-TD--KA--TQLPAMLATIRT-FLS  141 
T.tra             119 LMVALNKIDLF-PE--EKRASKVAKMTKRVAA-TLK  150 

cons              145                                       180 


eEFSec            173 N----TKFRGAPIIPVAAKPGGPEAP----------  194 
eEFSec_GTP_       161 N----TKFRGAPIIPVAAKPGGPEAP----------  182 
eEFSec_DomII_       1 ------------------------------------    0 
B.hom             148 K----TRFKNASIV----------------------  157 
C.mer             143 ------------------------------------  142 
C.owc             150 T----TKFGQVAVIPVAARPATGPA-----------  170 
E.sil             171 G----TKVPE-PLSGVTPPRPPSSCS----------  191 
H.ara             150 THFSSLKDVTIPVVPVVVGTGH--------------  171 
N.gru             142 Q----TKFKNPPIVSVCADPREESE-----------  162 
P.pal             140 ------------------------------------  139 
P.tri             158 A----TRFANAPIVGVAACVGGEKVA----------  179 
P.ult             144 AKFPRLRGQNVPIVAVAAAPAD-SAD----------  168 
S.par             142 SS---PTLQDCPIVPVAAGDAD-G-A----------  162 
T.tra             151 P----TAFANSDILPVSASSGKRASKVAKMTKRVAA  182 

cons              181                                       216 


eEFSec            195 ---------------ETEAPQGIPELIEL------L  209 
eEFSec_GTP_       183 ---------------ETEAPQGIPELIEL------L  197 
eEFSec_DomII_       1 ------------------------------------    0 
B.hom             158 ------------------------------------  157 
C.mer             143 ------------------------------------  142 
C.owc             171 --------------------IGVENLIQVVQVEAVL  186 
E.sil             192 ---------------EETSAMGIDTVAGE------L  206 
H.ara             172 ------------------KTEGIPHLLEV------L  183 
N.gru             163 ---------------SITKEQGLKNLIAE------F  177 
P.pal             140 ---------------------GVDRLIKE------L  148 
P.tri             180 ---------------AASEDMSKLEVRNT------L  194 
P.ult             169 -----------------EAKVGISTLVET------I  181 
S.par             163 -----------------RAPQGMPDLLAT------M  175 
T.tra             183 TLKPTAFANSDILPVSASSGDGLSDLVDA------L  212 

cons              217                                       252 


eEFSec            210 TSQISIPTRDP-SGPFLMSVDHCFSIKGQGTVMTGT  244 
eEFSec_GTP_       198 TSQ---------------------------------  200 
eEFSec_DomII_       1 ---------------FLMSVDHCFSIKGQGTVMTGT   21 
B.hom             158 -------------APLYFIYDHCFQLAGKGCVMTGT  180 
C.mer             143 ------------------------------------  142 
C.owc             187 AKSVPRQRHDS-AAPFVFAVDHCFAIKGQGTVLTGT  221 
E.sil             207 SRRARVPSRRA-SAPLYFAFDHCFSVRGQGTILTGT  241 
H.ara             184 RTHLQAPERDT-SGDFRLAVDHCFAVPGHGTVLTGT  218 
N.gru             178 QKHVKISEKDE-NEPFLYMVDHCFTIKGKGTIITGT  212 
P.pal             149 TNYVELPRRDD-QGPFLFEFDHCFQIKGQGSVMTGT  183 
P.tri             195 QDKLPPPKRTP-EGSFYFSVDHCFSIRGRGTVLTGT  229 
P.ult             182 RSHLYLPERNP-TGPFSLAIDHCFAIQGNGTILTGT  216 
S.par             176 QRHLHLPTRSG-DGPLCYAIDHCFPLRGKGTVLTGT  210 
T.tra             213 TAAVRLPTRNEAEDAFLFAIDHCFQVKGQGTVVTGT  248 

cons              253                                       288 


eEFSec            245 ILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSA  280 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      22 ILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSA   57 
B.hom             181 VLSGSVSVNDEIEFPSLHLTRKVKSIQMFHKGIDKV  216 
C.mer             143 ------------------------------------  142 
C.owc             222 ALSGQIQVNENIEIPTAKLSRKIKSIQMFHRPVQQI  257 
E.sil             242 VLTGEVKVNQLVELPSLRLQKKVKSMQMFRKPVSIA  277 
H.ara             219 VLSGALSKGSELELLPSGMKTTVKTLQVFRQDVERC  254 
N.gru             213 VLQGSVSIGKTIQIPSIGEEKKVKSIQMFKTPVDKA  248 
P.pal             184 VLRGSVEINQNIHIPQLNIEKKVKSMQMFHKPVKKA  219 
P.tri             230 VLNGAASVNDVLEFPTLGLDRKIKSIQMFKRQVQRI  265 
P.ult             217 VLSGSVKVNDEVEIPSLQVVKKVKSMQMFKQSVTSA  252 
S.par             211 VLSGTVRVNDTIAIPILGTEKKVKSLQMFHTSVEKA  246 
T.tra             249 IQRGSVAVGQTIEFPALGLSKKVKSMQMFKAPVERA  284 

cons              289                                       324 


eEFSec            281 MQGDRLGICVTQFDPKLLERGLVCA-PESLHTVHAA  315 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      58 MQGDRLGICVTQFDPKLLERGLVCA-----------   82 
B.hom             217 LKGDRAGICVQFW-----------------------  229 
C.mer             143 ------------------------------------  142 
C.owc             258 TAGDRAGICVTQFDASTLERGYACA-AGAVIFAHAL  292 
E.sil             278 RAGDRVGMCVASLDAKLMERGVVTT-PGSVRPISAA  312 
H.ara             255 VQGDRVGLRVNGLDPALVERALAVSPPGSLPAVTQV  290 
N.gru             249 IKGDRIGIAVTKLDSKKLERGFACD-KGYIEIVDTI  283 
P.pal             220 SQGDRVGICVTQLDANLLERGLLCT-PKTVPLLNGA  254 
P.tri             266 QQGDRAGVCVSNLDAKLLERGIAAT-PGAVQLLKGA  300 
P.ult             253 TQGDRVAIRVNGLDASLVERGMAIT-PHSMPYVTQV  287 
S.par             247 IQGDRVGLRLHGLDAATLERGLAIT-PKSLSFVLNL  281 
T.tra             285 VQGDRLGICVAQLNAKLLERGLACA-PGTIRAVSAA  319 

cons              325                                       360 


eEFSec            316 LISVEKIPYFRG-PLQTKAKFHITVGHETVMGRLMF  350 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      83 ------------------------------------   82 
B.hom             230 ------------------------------------  229 
C.mer             143 ------------------------------------  142 
C.owc             293 IARVDKVRFFKL-PVLSKSRFHVSMGHETVMGTASF  327 
E.sil             313 IALVRKVCR---------------------------  321 
H.ara             291 VIAVARVPLFQGGACKSGAKCHATVGHATVIATATF  326 
N.gru             284 LANASRIRFFKK-EIKNSAKYHISIGHETVMGNVSL  318 
P.pal             255 IVAIEKVRFYKN-EVKTKSQFHSQ------------  277 
P.tri             301 IALVRKVPYYVG-TLHSGSKFHISVGHTTIMATVTF  335 
P.ult             288 VVPVHQIAFFQG-TCKSGAKFHATINHTTVVAIATF  322 
S.par             282 VLQVHRVRFFGL-DCESGAKVHVTVGHSTVLAKATF  316 
T.tra             320 VVRVSRIPYFRG-EIKSRAKFHLTVGHETVMATLQF  354 

cons              361                                       396 


eEFSec            351 FSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTP  386 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      83 ------------------------------------   82 
B.hom             230 ------------------------------------  229 
C.mer             143 ------------------------------------  142 
C.owc             328 FTQENAS-----------------------------  334 
E.sil             322 ------------------------------------  321 
H.ara             327 FA----------------------------------  328 
N.gru             319 I-----------------------------------  319 
P.pal             278 ------------------------------------  277 
P.tri             336 WESLDG------------------------------  341 
P.ult             323 FSPEYVAQI-EPIADANS------------------  339 
S.par             317 FHGSHAS-----------------------------  323 
T.tra             355 F-----------------------------------  355 

cons              397                                       432 


eEFSec            387 AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTC  422 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      83 ------------------------------------   82 
B.hom             230 -------------------------ALLQLEQTIYA  240 
C.mer             143 ------------------------------------  142 
C.owc             335 -------------NSGQPPAPLATFALIELDHPVAC  357 
E.sil             322 ------------------------------------  321 
H.ara             329 ------------------------FALLQFE-----  335 
N.gru             320 ------------------------ARAIEFEKPVCC  331 
P.pal             278 ------------------------YALLTFEHPVLC  289 
P.tri             342 ------------------QESLLHWALLDFQIPVHC  359 
P.ult             340 -----GGSDLKAVEEGKEIKSVSYFALLQFD-----  365 
S.par             324 ------------------------FA-VELS-----  329 
T.tra             356 ------------------------YAVLELESPVLC  367 

cons              433                                       468 


eEFSec            423 PRLCLVIGSRLDADI----HTNTCRLAFHGILLHGL  454 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      83 ------------------------------------   82 
B.hom             241 PLGALLIGSQLNSQV----D-GTCRIAFYAKVIQAL  271 
C.mer             143 ------------------------------------  142 
C.owc             358 LSNALLIGSRLDLDPD--VHTKACRLAFSGRVHEAL  391 
E.sil             322 ------------------------------------  321 
H.ara             336 ------------------------------------  335 
N.gru             332 YPNSNYIASKLDTDI----NANMCRLAFNGKVIKMW  363 
P.pal             290 PLNSVIIGSKLDVNL----DTSSCRIAFHGELVEGI  321 
P.tri             360 PMDSLVIGSRLDTVDNSTGSASACRLAFSGRLMQSV  395 
P.ult             366 ------------------------------------  365 
S.par             330 ------------------------------------  329 
T.tra             368 APDAMIIGSRLDSDV----DGNVCRLAFSGSL----  395 

cons              469                                       504 


eEFSec            455 EDRN-YADSFLPRLKVYKLKHKHGLVERAMDDYSVI  489 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      83 ------------------------------------   82 
B.hom             272 SPK----KEDLSVLRVFKPKQRTAIVDRIVNEREVI  303 
C.mer             143 ------------------------------------  142 
C.owc             392 TDKS-YRETFLPKLKVFKRKSRTGTVERILDDYTLI  426 
E.sil             322 ------------------------------------  321 
H.ara             336 -------------------------------RAVFC  340 
N.gru             364 NKSNVSKEQLVNSLPVFKYKEKKAVVDRVVDANTII  399 
P.pal             322 DVTN--KQLLNNHLHIYKIKAKEGQIERIHSESTLI  355 
P.tri             396 DPG-----KDISKLRLYTPKERRGTISRLGDPHKVF  426 
P.ult             366 -------------------------------QPVLC  370 
S.par             330 ------------KLHIGKIKERHGLVEKCGEHGVAI  353 
T.tra             396 ------------------------------------  395 

cons              505                                       540 


eEFSec            490 GRSLFKK-ETNIQLFVGLKVHLS----TGELGIIDS  520 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      83 ------------------------------------   82 
B.hom             304 GTNLTEK-GGTIAAFVGLDVVTK----SGLKGRIDA  334 
C.mer             143 ------------------------------------  142 
C.owc             427 GKGLFKK-ETTLEPFLGLQVGLS----SGEVGEIEG  457 
E.sil             322 ------------------------------------  321 
H.ara             341 ------P-PATLVVCSRLDL----------------  353 
N.gru             400 GKNLLTSKTQSLQFFIGKKIDILIDDQPRFSGIIDS  435 
P.pal             356 GKNIFGK-DTDLSKFIGMKVIFD----NGMFDV---  383 
P.tri             427 GSDLFKK-ETNMKAFFGMKVQTE----RNEIGEIKS  457 
P.ult             371 ------P-RDALVICSRLDL----------------  383 
S.par             354 VKDLFRK-ETNLDIFKGLTVQNE---RSRALGAIDG  385 
T.tra             396 ------------------------------------  395 

cons              541                                       576 


eEFSec            521 AFGQSGKFKIHIPGGLSPESKKILTPALKKRARAGR  556 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      83 ------------------------------------   82 
B.hom             335 PFGKSGKFK---------------------------  343 
C.mer             143 ------------------------------------  142 
C.owc             458 AFGQSGKFRVRMRQAVSDATKATLAASDK-------  486 
E.sil             322 ------------------------------------  321 
H.ara             354 -DAKRFSCRLAFY-----------------------  365 
N.gru             436 PFGQSGKFK---------------------------  444 
P.pal             384 ------------------------------------  383 
P.tri             458 SFGTSGKYRVFFPAGTEAKEGEPL------------  481 
P.ult             384 -DPKKFACRLAFH-----------------------  395 
S.par             386 AFGKTGKCRVQFTDGSTQPG----------------  405 
T.tra             396 ------------------------------------  395 

cons              577                                       612 


eEFSec            557 GEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRM  592 
eEFSec_GTP_       201 ------------------------------------  200 
eEFSec_DomII_      83 ------------------------------------   82 
B.hom             344 ------------------------------------  343 
C.mer             143 ------------------------------------  142 
C.owc             487 ------------------------------------  486 
E.sil             322 ------------------------------------  321 
H.ara             366 ------------------------------------  365 
N.gru             445 ------------------------------------  444 
P.pal             384 ------------------------------------  383 
P.tri             482 ---------------------ILRF-----------  485 
P.ult             396 ------------------------------------  395 
S.par             406 ------------------------------------  405 
T.tra             396 ------------------------------------  395 

cons              613                                       648 


eEFSec            593 VQSP  596 
eEFSec_GTP_       201 ---I  201 
eEFSec_DomII_      83 ---P   83 
B.hom             344 ---V  344 
C.mer             143 ---D  143 
C.owc             487 PKGK  490 
E.sil             322 ---F  322 
H.ara             366 ---G  366 
N.gru             445 ---V  445 
P.pal             384 ---L  384 
P.tri             486 KRFA  489 
P.ult             396 ---G  396 
S.par             406 DRLV  409 
T.tra             396 ---V  396 

cons              649       652