T-COFFEE, Version_8.99(Thu Feb 17 19:24:49 CET 2011 - Revision 594)
Cedric Notredame
CPU TIME:1 sec.
SCORE=90
*
BAD AVG GOOD
*
SECp43 : 90
SECp43_RRM1 : 86
B.hom : 75
C.mer : 89
C.mur : 91
C.owc : 90
C.par : 91
E.sil : 91
H.ara : 91
N.gru : 89
P.pal : 90
P.tri : 91
P.ult : 91
S.par : 91
T.tra : 89
cons : 90
SECp43 1 MAASLWMGDLEPYMDENFISRAFATMG-E-TVMSVKIIR 37
SECp43_RRM1 1 ---SLWMGDLEPYMDENFISRAFATMG-E-TVMSVKIIR 34
B.hom 1 --------------------------------------- 0
C.mer 1 ---SLYVGDLQPDVVEQNLFELFSSVG-P--VVSVRVCR 33
C.mur 1 VSASLYVGDLDPDVTETMLYEIFNSVA-V--VSSVRICR 36
C.owc 1 MSTCLWFGDLEPSWDESFISSLFGQAG-E-PVVGVKIIK 37
C.par 1 VSASLYVGDLDADVTETMLYEIFNSVA-V--VSSVRICR 36
E.sil 1 --------------------------------LEVKLIR 7
H.ara 1 ---TLWMGDIQMHWDEAFIASLFASAA-E--QPVIKLIR 33
N.gru 1 A-RTLWMGDLDDSMDDEYVKKLFANDIRP-SINSVKIIK 37
P.pal 1 ---SLYVGDLAPDVNEIMLSELFSKVG-RSAVASIHVCR 35
P.tri 1 ---SLYVGDLAPDVNESLLFEIFSAVG-P--VASIRVCR 33
P.ult 1 ---TLWMGDIQMHWDEAFISSLFAATG-E--QPVVKLIR 33
S.par 1 ---------------------------------TVKLIR 6
T.tra 1 --------------------RASSSLG-T--VVSAKIIL 16
cons 1 39
SECp43 38 NRLTGIPAGYCFVEFADLATAEKCLHKINGK---PLPGA 73
SECp43_RRM1 35 NRLTGIPAGYCFVEFADLATAEKCLHKINGK---PLP-- 68
B.hom 1 --------------------------------------- 0
C.mer 34 DVVTRRSLGYAYVNFQNPEDAERAIDVLQFYEGPLTKNK 72
C.mur 37 DALTRRSLGYAYVNYNSVADAERALDTLNFT---CIRSR 72
C.owc 38 NRLTGGPAGYCFVDFGNSDRAVRVLHALNGA---QIPGL 73
C.par 37 DALTRRSLGYAYVNYNSVADAERALDTLNFT---CIRGR 72
E.sil 8 DRHRGIVAGYGFIDFRNHETAQLVLDSLNGK---PIEGT 43
H.ara 34 DKVTGYPAGYGFLEFPTQRGAQQVLEMFNGQ---LVQNT 69
N.gru 38 DRNTGKSIGYGFVEFASIEIAKAVLESYAGK---PIPTL 73
P.pal 36 DSITFRSLGYAYVNFFNSIDAERALDTLNYS---QIMGR 71
P.tri 34 DAVTRRSLGYSYVNFHQMADAERAMDTMNFS---MIKGK 69
P.ult 34 DKVTGYPAGYGFLEFPTQRGAQLVLETYNGQ---VIPNT 69
S.par 7 DKVTGYPAGYGFLEFDSPEAASEVLSTLNGQ---PIPNT 42
T.tra 17 DAETHGSAGYGFVEFETREGAQAAMPILQGR---RVRAL 52
cons 40 78
SECp43 74 TPAKRFKLNYATYGKQP---------------DN--SPE 95
SECp43_RRM1 69 --------------------------------------- 68
B.hom 1 -----FRLNFGGNSRNL---------------NL--GDN 17
C.mer 73 ----PIRIMWKRSDPSQ---------------RR--NPE 90
C.mur 73 ----PCRIMWCLRDPAS---------------RR--NNE 90
C.owc 74 DPSRRFRLNLALYSGAT---------------RN--EPE 95
C.par 73 ----PCRIMWCLRDPAS---------------RR--NND 90
E.sil 44 --SLRYRLNWGAGGKRI---------------EQ--APE 63
H.ara 70 --VHRFRMNWGAGGRRI---------------ET--SDD 89
N.gru 74 -PNKIYRLNWAAQNQGSNPLFSSQPGGKPSSGGK--ENI 109
P.pal 72 ----PCRIMWSLRDPTK---------------RK--SNV 89
P.tri 70 ----PCRIMWSQRDPSL---------------RR--SGV 87
P.ult 70 --LHRFRMNWGAGGRRI---------------ET--GDD 89
S.par 43 --PHRFRLNWGAGGKRL---------------ES--MED 62
T.tra 53 ----RIRINWAVQGSRR---------------VADEDGL 72
cons 79 117
SECp43 96 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-T 133
SECp43_RRM1 69 --------------------------------------- 68
B.hom 18 YCLYIGDLESSVTDTQLYTIFRDKYLSFCGAKVLF---- 52
C.mer 91 GNIFIKNLDKSIDNKALYDTFS-TFGKVLSCKLATDD-K 127
C.mur 91 GNVFVKNLDKSIDNKTLFDTFS-LFGNIMSCKIATDS-E 127
C.owc 96 YSLFVGDLTADVTDFQLHSFFKQLYASCKTAKVVVDQ-A 133
C.par 91 GNVFVKNLDKSIDNKTLFDTFS-LFGNIMSCKIATDV-E 127
E.sil 64 YSVFVGDLSPEVTDAELKATFLGKYTSVLGAKVVTNPMT 102
H.ara 90 HSIFVGDLAPDVGDEVLLSTFNARFTSVRGAKVVMDPVT 128
N.gru 110 VSIFVGDLAPDVNDYMLEQTFRNRYPSVRGAKVVMDPKS 148
P.pal 90 GNIFVKNLDKQVDNAMLFDTFS-KFGNILSCKIEYE--K 125
P.tri 88 GNIFVKNLNEAIDNKQLYDTFS-LFGNILSCKVVTDREG 125
P.ult 90 HSVFVGDLAPDVSDELLLTTFSTRFSSVRGAKVVIDPVT 128
S.par 63 HSVFVGDLAGDVTDDVLFSTFSAKYASVRGAKVVLDQMS 101
T.tra 73 HSLFVGDLCKSVDDDMLHDAFA-HFSSLTSARVMWDVRT 110
cons 118 156
SECp43 134 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 172
SECp43_RRM1 69 --------------------------------------- 68
B.hom 53 --------------------------------------- 52
C.mer 128 GNSLGYAFVHYQDANVAKYVISKMNGML-LNGQ------ 159
C.mur 128 GNSLGYGFIHFEHPESAKEAIARLNGMI-LGDRPIYVGK 165
C.owc 134 GTPKGFGFVRFTDSNDCLRALLEMNGAVGCGGKPMRVSA 172
C.par 128 GKSLGYGFIHFEHADSAKEAISRLNGAV-LGDRPIYVGK 165
E.sil 103 GSSKSFGFIRFGDEQERDEALTAMNGAE-CCGRPIRVAP 140
H.ara 129 RMSKGFGFVRFGSKEEADQALQTMNGVF-CSSRPMRVSV 166
N.gru 149 GISKGYGFVKFADEDDMMRSMTEMQGVY-ISSRPVKISH 186
P.pal 126 GVSKGYGYVHFETQESSDRAIQGVNGTM-LCGKPITVEQ 163
P.tri 126 GVSMGYGYVH----------------------------- 135
P.ult 129 RMSKGFGFVRFGNKEEADQALQTMNGVY-CSSRPMRVSV 166
S.par 102 RISKGFGFVR----------------------------- 111
T.tra 111 GTSREFGFVSFRDASDAERALKTMGGTM-LGRRPIRVNR 148
cons 157 195
SECp43 173 AIPKASRVKPVEYSQMYSY----SYNQYYQQYQNYYAQW 207
SECp43_RRM1 69 --------------------------------------- 68
B.hom 53 --------------------------------------- 52
C.mer 160 --------------------------------------- 159
C.mur 166 FQRKA---------------------------------- 170
C.owc 173 ATP------------------------------------ 175
C.par 166 FQKKA---------------------------------- 170
E.sil 141 ATKR----------------------------------- 144
H.ara 167 --------------------------------------- 166
N.gru 187 --------------------------------------- 186
P.pal 164 FVSKVER-------------------------------- 170
P.tri 136 --------------------------------------- 135
P.ult 167 ATDRNG--KPRSGNQVYGAGAAGGAGGYYQQYPNY-QQS 202
S.par 112 --------------------------------------- 111
T.tra 149 AN------------------------------------- 150
cons 196 234
SECp43 208 GYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMP 246
SECp43_RRM1 69 --------------------------------------- 68
B.hom 53 --------------------------------------- 52
C.mer 160 --------------------------------------- 159
C.mur 171 --------------E------------------------ 171
C.owc 176 --------------------------------------- 175
C.par 171 --------------E------------------------ 171
E.sil 145 --------------T------------------------ 145
H.ara 167 --------------------------------------- 166
N.gru 187 --------------------------------------- 186
P.pal 171 --------------F------------------------ 171
P.tri 136 --------------------------------------- 135
P.ult 203 GY-QNYYGYGGYYPQ------------------------ 216
S.par 112 --------------------------------------- 111
T.tra 151 --------------K------------------------ 151
cons 235 273
SECp43 247 QLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPA 285
SECp43_RRM1 69 --------------------------------------- 68
B.hom 53 --------------------------------------- 52
C.mer 160 --------------------------------------- 159
C.mur 172 --------------------------------------- 171
C.owc 176 --------------------------------------- 175
C.par 172 --------------------------------------- 171
E.sil 146 --------------------------------------- 145
H.ara 167 --------------------------------------- 166
N.gru 187 --------------------------------------- 186
P.pal 172 --------------------------------------- 171
P.tri 136 --------------------------------------- 135
P.ult 217 --------------------------------------- 216
S.par 112 --------------------------------------- 111
T.tra 152 --------------------------------------- 151
cons 274 312
SECp43 286 MM 287
SECp43_RRM1 69 -G 69
B.hom 53 -N 53
C.mer 160 -K 160
C.mur 172 -R 172
C.owc 176 -K 176
C.par 172 -R 172
E.sil 146 -S 146
H.ara 167 -A 167
N.gru 187 -A 187
P.pal 172 -K 172
P.tri 136 -Y 136
P.ult 217 -Y 217
S.par 112 -F 112
T.tra 152 -K 152
cons 313 314