TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= TR.Phytophthora_sojae.1 located on gi|113926705|gb|AAQY01000043.1|:subseq(83956,3493)strand - positions 3478,2000 (498 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic s... 218 9e-57 gb|GL291013.1| Polysphondylium pallidum PN500 unplaced genomic s... 157 2e-38 gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic s... 33 0.67 gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic s... 32 0.88 gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic s... 32 0.88 gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic s... 32 1.1 gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic s... 32 1.5 gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s... 31 2.6 gb|GL291016.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 4.4 gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 4.4 >gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig15, whole genome shotgun sequence Length = 727357 Score = 218 bits (555), Expect = 9e-57 Identities = 149/410 (36%), Positives = 223/410 (54%), Gaps = 4/410 (0%) Frame = -3 Query: 1 DEAETSYDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGC 60 D+ + +D +V+GGGSGG+A ++ AA +G KV +++ + +GGTCVNVGC Sbjct: 504101 DKIMSENHFDFLVLGGGSGGIATARRAAKYGVKVGLIEKTR---------MGGTCVNVGC 503949 Query: 61 IPKKLMHQSSLIGELMHHDSANFGWNIASADGSASTFSWKQLVANVDGYIRGINFKYKVE 120 +PKK+M ++ I E +H +A F + AD T+ W + N D YI +N Y Sbjct: 503948 VPKKVMWNAATIKEALH--AAPF-YGFEGAD--KVTYHWPTIKKNRDAYIARLNGIYNNM 503784 Query: 121 LRSKYVKYENFLGSFVDAHTLELWHPRKGTKQITTRD-VVIAVGGRPKELTCPGGEHAIS 179 L VK N G F LE+ Q+ T D ++IA GG P+ PG E I+ Sbjct: 503783 LAGSNVKSINGWGKFTGPRQLEV------DGQVYTADNILIATGGYPQIPQVPGAELGIT 503622 Query: 180 SDDIFWMKKKEPGKTLVVGASYVALECAGFLKGMGYDVKVMVR-SILLRGFDQDMANKIG 238 SD F + + P V+GA Y+A+E G L +G +++R LR FD +A+K+ Sbjct: 503621 SDGFFDLAEL-PKSVAVIGAGYIAVELVGILNTLGSKSSLVIRHDHFLRTFDDIVAHKLQ 503445 Query: 239 EYMEVQSGIEFIRKTVPQSITKLENGQLLVKWTTEDGESCEEAFDTVLNATGRDPDVAKL 298 E M V GI + + ++ K ENGQ++V T E DTV+ A GRDP + Sbjct: 503444 EQM-VTDGINIVTNSTISALRKTENGQIVV--VTNHTEL--PPVDTVIWAIGRDPSTKGI 503280 Query: 299 GLDKARVKLNEKTGRIWVKNEQ-TSTPNIYAIGDVIDAPELTPVAIQAGRLLSRRLYNNS 357 GL+ A V +NE+ G I V Q T ++A+GDV ELTPVAI AGR L+ RL+N Sbjct: 503279 GLEAAGVSVNER-GYIKVDEFQYTGAQGVFAVGDVTGNKELTPVAIAAGRRLAERLFNKQ 503103 Query: 358 TA-QMDYDKICTAVFTPIEYGCCGLSEEDSKERYGEDNIEVYHKNFVPLE 406 + DY+ I + VF+ G GL+E+++ +YG++N++VY+ +V L+ Sbjct: 503102 EGLKFDYENIPSVVFSHPPIGTVGLTEKEAIAKYGKENVKVYNSRYVNLQ 502953 >gb|GL291013.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig16, whole genome shotgun sequence Length = 228641 Score = 157 bits (397), Expect = 2e-38 Identities = 141/478 (29%), Positives = 224/478 (46%), Gaps = 9/478 (1%) Frame = -2 Query: 8 DYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPKKLMH 67 + D+VVIGGG GG +A G KV V++ LGGTC+NVGCIP K + Sbjct: 169036 EQDVVVIGGGPGGYVAGIKAGQLGMKVTVVE--------KRGKLGGTCLNVGCIPSKALL 168881 Query: 68 QSSLIGELMHHDSANFGWNIASAD-GSASTFSWKQLVANVDGYIRGINFKYKVELRSKYV 126 +S E AN+G + S + A+ +K+ +V+G GI +K V Sbjct: 168880 NASHKYEDAKTKFANYGVKVGSVELDLAAMMKYKE--KSVNGLTSGIEGLFK----KNKV 168719 Query: 127 KYENFLGSFVDAHTLELWHPRKGTKQITTRDVVIAVGGRPKELTCPG-GEHAISSDDIFW 185 Y G +T+E+ + ITT+++VIA G L E I S Sbjct: 168718 TYAKGHGKITGPNTVEVTGEDGKVQTITTKNIVIATGSEVASLPNVNIDEQTIVSSTGAL 168539 Query: 186 MKKKEPGKTLVVGASYVALECAGFLKGMGYDVKVM-VRSILLRGFDQDMANKIGEYMEVQ 244 K P + +V+G + LE +G + V+ + + G D ++A K + +E Q Sbjct: 168538 ALKAVPKRMVVIGGGVIGLELGSVWSRLGAETTVVEFTNRIAAGADGEVAKKFQKVLEKQ 168359 Query: 245 SGIEFIRKTVPQSITKLENGQLLVKWTTED----GESCEEAFDTVLNATGRDPDVAKLGL 300 ++F +T S+ K NG + V T E G S + D VL + GR P+ LGL Sbjct: 168358 H-MKFHLETKVTSVVKNANGTVTV--TVESVGAGGFSGQIEADVVLVSVGRRPNTTNLGL 168188 Query: 301 DKARVKLNEKTGRIWVKNE-QTSTPNIYAIGDVIDAPELTPVAIQAGRLLSRRLYNNSTA 359 DK V + +K GR+ V + +T+ +IYAIGD I P L A + G + L+N S Sbjct: 168187 DKVGVPM-DKAGRVEVGDHFKTNVKSIYAIGDAIKGPMLAHKAEEEGIAVMEYLHNGS-G 168014 Query: 360 QMDYDKICTAVFTPIEYGCCGLSEEDSKERYGEDNIEVYHKNFVPLEWSLSEETRTAAES 419 ++Y I + ++T E G +EE+ + + N+ + ++ + RT ES Sbjct: 168013 HVNYAAIPSVIYTHPEVAWVGKTEEELTKEGIKFNVGKF-------PYAANSRARTNDES 167855 Query: 420 -CYLKVICDKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGFTYDQMVDTVGIHPTTAE 476 ++K + D + D+ ++G H +G AGE+ LAM+ G + + + T HPT +E Sbjct: 167854 EGFVKFLSDSSTDR-ILGVHIMGDCAGEMIAESVLAMEYGASSEDVARTCHAHPTLSE 167684 >gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig9, whole genome shotgun sequence Length = 1029409 Score = 32.7 bits (73), Expect = 0.67 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Frame = -1 Query: 444 AGEVTQAMGLAMKLGFTYDQM-----VDTVGIHPTTAETFTTLEITKSSGGTTTGGGCUG 498 +G+V Q +++K G Y++ +DT G PTT E + +I S + +GGG G Sbjct: 190291 SGDVPQEPVVSIKTGNVYEKRLIEKYIDTNGREPTTGEPLSITDIVVISKQSMSGGGVGG 190112 >gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold9, whole genome shotgun sequence Length = 2264991 Score = 32.3 bits (72), Expect = 0.88 Identities = 20/45 (44%), Positives = 23/45 (51%) Frame = +1 Query: 9 YDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGG 53 YD +VIG GS G S A G V VLD + S Q + GL G Sbjct: 879946 YDYIVIGAGSAGSIVSSRLAKNGSSVLVLDAGEESVQ--TQGLNG 880074 >gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold1, whole genome shotgun sequence Length = 1995969 Score = 32.3 bits (72), Expect = 0.88 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Frame = -3 Query: 9 YDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPKKLMHQ 68 YD+ VIG G G S A G+KV VL+ K P+ G V + + ++ + Sbjct: 486091 YDVAVIGAGPSGSTLSYYLAREGRKVAVLE-KKKFPRDKFCGDA-----VATMAQDILRE 485930 Query: 69 SSLIGELMHHDSANFGWN--IASADGSASTFSWKQLVANVDGYIRGINFKYK-VELRSKY 125 ++ EL+ D +F N S +G++ + + +A Y RG K + L K Sbjct: 485929 MGVMKELVDEDLGHFAQNGGFVSPNGNSFIGNSAKEMARDAKYNRGAVIAVKRIYLDEKI 485750 Query: 126 VKYENFLGS 134 K +G+ Sbjct: 485749 AKAAKRMGA 485723 >gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold8, whole genome shotgun sequence Length = 2270872 Score = 32.0 bits (71), Expect = 1.1 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 8 DYDLVVIGGGSGGLACSKEAASFGQKVCVLD 38 +YD +VIGGG GL C+ G V VL+ Sbjct: 464123 EYDCIVIGGGLSGLQCAYTLKKQGHSVLVLE 464031 Score = 29.3 bits (64), Expect = 7.5 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1 Query: 1 DEAETSYDYDLVVIGGGSGGLACSKEAASFGQKVCVLD 38 +E E YD++V+GGG G + + A G KV +L+ Sbjct: 743623 EEEEDDKFYDVIVVGGGITGSSSAYMLAKSGLKVLLLE 743736 >gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig6, whole genome shotgun sequence Length = 254162 Score = 31.6 bits (70), Expect = 1.5 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 188 KKEPGKTLVVGASYVALECAGFLKGMGYDVKVMVRSILLRGFDQDMANKIG-EYMEV 243 K P KTLV+GA L G KG+G +VR+ R ++ +G E++EV Sbjct: 188665 KIPPSKTLVIGAGVAGLSAIGTAKGLG----SVVRAFDTRAAAKEQVKSMGAEFLEV 188823 >gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2, whole genome shotgun sequence Length = 3242543 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = -1 Query: 442 PNAGEVTQAMGLAMKLGFT---YDQMVDTVGIHPTT-AETFTTLEITKSSGGTTT 492 P+ G + + GL M + + Y +++T GI TT A TTL ITK S TTT Sbjct: 40754 PSLGHLRKGTGLFMDIDCSTPLY*ILINTKGIPTTTIAAASTTLTITKQSTTTTT 40590 >gb|GL291016.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig19, whole genome shotgun sequence Length = 8285 Score = 30.0 bits (66), Expect = 4.4 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -1 Query: 7 YDYDLVVIGGGSGGLACSKEAASFGQKVCVLD 38 ++YD+VV+G G+GG+ S A G K +++ Sbjct: 2507 HNYDVVVVGSGAGGMTASITAQLKGLKTLLIE 2412 >gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig1, whole genome shotgun sequence Length = 1301413 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -3 Query: 3 AETSYDYDLVVIGGGSGGLACSKEAASFGQKVCVLD---YVKPSPQGTSW 49 +E S D+VVIG G+GG + A G V VL+ YV SP +W Sbjct: 207170 SERSLKADVVVIGSGAGGGITAAMLAEAGYSVIVLEKGGYV--SPNAMTW 207027 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.317 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,270,376 Number of Sequences: 42 Number of extensions: 241772 Number of successful extensions: 1077 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 981 Number of HSP's gapped (non-prelim): 356 length of query: 498 length of database: 10,980,844 effective HSP length: 105 effective length of query: 393 effective length of database: 10,976,434 effective search space: 4313738562 effective search space used: 4313738562 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 63 (28.9 bits)