TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR.Phytophthora_sojae.1 located on
gi|113926705|gb|AAQY01000043.1|:subseq(83956,3493)strand - positions
3478,2000
         (498 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol...   431   e-121
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    30   1.6  
gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    27   8.0  

>gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun
              sequence
          Length = 985969

 Score =  431 bits (1109), Expect = e-121
 Identities = 240/511 (46%), Positives = 333/511 (65%), Gaps = 15/511 (2%)
 Frame = -2

Query: 3      AETSYDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIP 62
              A+ ++ YDLVVIGGGSGG+A +KEAA +G+KV + D+VKPS QGT WGLGGTCVNVGC+P
Sbjct: 966303 ADLTFMYDLVVIGGGSGGMAAAKEAAKYGKKVALFDFVKPSTQGTKWGLGGTCVNVGCVP 966124

Query: 63     KKLMHQSSLIGELMHHDSANFGWNIASADGSASTFSWKQLVANVDGYIRGINFKYKVELR 122
              KKLMH S+LI   +HHD+  FG        ++S+F W +LV  +  +IR +NF Y+  LR
Sbjct: 966123 KKLMHYSALIASSIHHDAQMFGHK------TSSSFEWGKLVETLRNHIRMLNFSYRTGLR 965962

Query: 123    SKYVKYENFLGSFVDAHTLELWHPRKGTKQITTRDVVIAVGGRPK-ELTCPGG-EHAISS 180
                 V+Y N L   +D H++E +      K IT+R +++A GGRP    T PG  +++I+S
Sbjct: 965961 VGNVEYINALAKLIDPHSVE-YEDNGQKKTITSRYILLATGGRPSIPETVPGAIQYSITS 965785

Query: 181    DDIFWMKKKEPGKTLVVGASYVALECAGFLKGMGYDVKVMVRSILLRGFDQDMANKIGEY 240
              DDIF++  K PGKTLV+GASY+ LE AGFL  +G+D  V +RSI LRGFD+  + KI EY
Sbjct: 965784 DDIFFL-SKSPGKTLVIGASYIGLETAGFLNELGFDTTVAMRSIPLRGFDRQCSEKIVEY 965608

Query: 241    MEVQSGIEFIRKTVPQSITKLENGQLLVKWTTEDGESCEEAFDTVLNATGRDPDVAKLGL 300
              M+  +G +F+   VP +I K+      +K +  DG    E F+TVL ATGR+PDV  L L
Sbjct: 965607 MKA-TGTKFLVGVVPINIEKVNEN---IKVSFSDGS--VEEFETVLYATGRNPDVKGLNL 965446

Query: 301    DKARVKLNEKTGRIWVKNEQTSTPNIYAIGDVIDA-PELTPVAIQAGRLLSRRLYNNSTA 359
              +   V++++ +G+I    + TS P+I+A+GD+++  PELTPVA++AG LL+RRL+  S  
Sbjct: 965445 NAIGVEVSD-SGKIIAPKDATSVPSIFAVGDIVEGRPELTPVAVKAGILLARRLFAGSNE 965269

Query: 360    QMDYDKICTAVFTPIEYGCCGLSEEDSKERYGEDNIEVYHKNFVPLEWSLSEETR----- 414
               +DYD + T VFTPIEYG  GLS E +  +YGED+IE Y   F  LE + +   +     
Sbjct: 965268 FIDYDFVPTTVFTPIEYGHVGLSSEAAIAKYGEDDIEEYLSEFSTLEIAAAHREKPEHLR 965089

Query: 415    ------TAAESCYLKVICDKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGFTYDQMVDTV 468
                        +C  K++  K++ + VVGFH++GPNAGE+TQ   LA+KLG T     D +
Sbjct: 965088 ENEMDFALPLNCLAKLVVVKSQGEKVVGFHFVGPNAGEITQGFSLAVKLGATKKDFDDMI 964909

Query: 469    GIHPTTAETFTTLEITKSSGGT-TTGGGCUG 498
              GIHPT AE F  LE+TK SG +  + GGC G
Sbjct: 964908 GIHPTDAEVFGILEVTKRSGESFVSSGGCGG 964816


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
              sequence
          Length = 1344712

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 5      TSYDYDLVVIGGGSGGLACSKEAASFGQKVCVLD 38
              T  +YD+++IG G  G + +   A+ G+KV +L+
Sbjct: 706426 TDEEYDVIIIGAGVSGCSMANVYANNGKKVLLLE 706527


>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 376    YGCCGLSEED--SKERYGEDNIEVYHKNFVPLEWSLSEETRTAAESCYLKVICDKTRDKF 433
              Y  C +   D     ++G  NIE  H         +  + R   E+CY  ++  K +++ 
Sbjct: 578704 YKACFIDSIDMFDNSKFGITNIEAKH---------MDPQQRIVLETCYEALVAAKIKEET 578856

Query: 434    VVGF 437
              ++GF
Sbjct: 578857 LIGF 578868


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.317    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,470,377
Number of Sequences: 8
Number of extensions: 60940
Number of successful extensions: 264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 68
length of query: 498
length of database: 3,034,108
effective HSP length: 96
effective length of query: 402
effective length of database: 3,033,340
effective search space: 1219402680
effective search space used: 1219402680
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)