TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= TR.Phytophthora_sojae.1 located on gi|113926705|gb|AAQY01000043.1|:subseq(83956,3493)strand - positions 3478,2000 (498 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 385 e-114 supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 92 6e-19 supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 29 6.4 supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 29 8.3 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 385 bits (990), Expect(2) = e-114 Identities = 231/542 (42%), Positives = 300/542 (55%), Gaps = 107/542 (19%) Frame = +3 Query: 22 ACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPKKLMHQSSLIGEL------ 75 A +K AA G++VCVLD+VKPSPQG++WGLGGTCVNVGCIPKKLMHQ+ L+GE Sbjct: 1734588 AMNK*AAKLGKRVCVLDFVKPSPQGSTWGLGGTCVNVGCIPKKLMHQACLLGEAIEVTKK 1734767 Query: 76 ----------------------MHH-----------------------DSANFGWNIASA 90 + H D+ FGW + A Sbjct: 1734768 ARKGQPREAQARAHQTSIEVF*LEHAKTTQTP*LRKPLF*TLV*LAL*DAEKFGWEVEKA 1734947 Query: 91 DGSASTFSWKQLVANVDGYIRGINFKYKVELRSKYVKYENFLGSFVDAHTLELWHPRKGT 150 + W +LV V +I G+NF Y+V LR V Y N G F DAHT+E ++ Sbjct: 1734948 N---IKHDWSKLVMGVSDHIGGLNFAYRVSLRENNVTYLNAYGVFKDAHTIECTDKKRKV 1735118 Query: 151 KQITTRDVVIAVGGRPKELTCPGG-EHAISSDDIFWMKKKEPGKTLVVGASYVALECAGF 209 +T V+AVGGRPK PG E I+SDD+F + PGKTLVVGASYVALECAGF Sbjct: 1735119 TTLTAEHFVLAVGGRPKYPDIPGARELGITSDDMFSLPYA-PGKTLVVGASYVALECAGF 1735295 Query: 210 LKGMGYDVKVMVRSILLRGFDQDMANKIGEYMEVQSGIEFIRKTVPQSITKLE------N 263 L G+GYD VM RSI LRGFDQ A +I YM + G +F+R+ VP S+ ++E Sbjct: 1735296 LTGLGYDTTVMARSIFLRGFDQQCAEQIAAYMS-EHGTKFLRRCVPLSLERIEPEADSAT 1735472 Query: 264 GQLLVKWTTEDG---ESCEEAFDTVLNATGRDPDVAKLGLDKARVKLNEKTGRIWVKNEQ 320 G+ ++ T EDG E + FDTVL A GR+ + +GL+ +K N +G++ EQ Sbjct: 1735473 GRHRIRVTWEDGLANEPGSDVFDTVLFAIGREAVTSTIGLEALGLKAN-ASGKVDAPLEQ 1735649 Query: 321 TSTPNIYAIGDVIDA-PELTPVAIQ----------------------------------- 344 TS PN++AIGDVI+ PELTPVAIQ Sbjct: 1735650 TSVPNVFAIGDVINGRPELTPVAIQVRVWSSSFAREGLLHSGLCCRGLIPSLPLPRLLPI 1735829 Query: 345 ----------AGRLLSRRLYNNSTAQMDYDKICTAVFTPIEYGCCGLSEEDSKERYGEDN 394 AGRLL++RLY +T QMDY I T VFTP+EYGC G++EED+ Y E+N Sbjct: 1735830 IIIFSHDDA*AGRLLAKRLYGGATTQMDYANIPTTVFTPLEYGCIGMAEEDAIALYKEEN 1736009 Query: 395 IEVYHKNFVPLEWSLSEETRTAAESCYLKVICDKTRDKFVVGFHYLGPNAGEVTQAMGLA 454 IEV+H+ F PLEW+++ A +CY K+IC+K + V+G H LGPNAGE+TQ G+A Sbjct: 1736010 IEVFHQYFQPLEWTVAHR---PASTCYCKLICNKLDNMRVIGLHILGPNAGEITQGYGVA 1736180 Query: 455 MK 456 + Sbjct: 1736181 FR 1736186 Score = 162 bits (410), Expect = 5e-40 Identities = 119/348 (34%), Positives = 176/348 (50%), Gaps = 38/348 (10%) Frame = -2 Query: 172 PGGEHAISSDDIFWMKKKEPGKTLVVGASYV----------------------------- 202 PG H I+SD F + + +P K VVGA YV Sbjct: 397787 PGAHHGITSDGFFELNE-QPKKVAVVGAGYVPVFFFGGGLHYLKFEQSVRTDIQMRHT*S 397611 Query: 203 ---ALECAGFLKGMGYDVKVMVRSI-LLRGFDQDMANKIGEYMEVQSGIEFIRKTVPQSI 258 A+E AG + +G +V ++VR +LR FD + + E + SG+ + T S+ Sbjct: 397610 RYIAVELAGIFRALGSEVSLLVRHDGVLRKFDSMLHKGVEEELTA-SGVNLLLNTHVSSV 397434 Query: 259 TKLENGQL---LVKWTTEDGESCEEAFDTVLNATGRDPDVAKLGLDKARVKLNEKTGRIW 315 TK ++G L L TT+ G FD ++ A GR P + L L+K V L +K G I Sbjct: 397433 TKDDSGHLSLALTNGTTQSG------FDCLVWAIGRSPTIEDLDLEKTGVSL-DKDGLIK 397275 Query: 316 VKNEQTST-PNIYAIGDVIDAPELTPVAIQAGRLLSRRLYNNST-AQMDYDKICTAVFTP 373 V Q +T I+A+GDV +LTPVAI AGR LS RL+ T +++Y+ I + VF+ Sbjct: 397274 VDEFQNTTHEGIHAVGDVASHWQLTPVAIAAGRRLSERLFAGKTDLKLEYENIASVVFSH 397095 Query: 374 IEYGCCGLSEEDSKERYGEDNIEVYHKNFVPLEWSLSEETRTAAESCYLKVICDKTRDKF 433 G GLSEED+ ++G+DN+++Y F + S++ T +K++C +K Sbjct: 397094 PALGTVGLSEEDAIAKHGKDNLKIYSATFTNMYHSMT----TRKTKTRVKLVCLGKEEK- 396930 Query: 434 VVGFHYLGPNAGEVTQAMGLAMKLGFTYDQMVDTVGIHPTTAETFTTL 481 V+G H +G A E+ Q +A+K+G T Q DTV IHPT +E TL Sbjct: 396929 VIGVHVIGIGADEMIQGFAVAVKMGATKAQFDDTVAIHPTASEELVTL 396786 Score = 45.4 bits (106), Expect(2) = e-114 Identities = 23/42 (54%), Positives = 27/42 (64%) Frame = +2 Query: 457 LGFTYDQMVDTVGIHPTTAETFTTLEITKSSGGTTTGGGCUG 498 LG T D TVGIHPT +E FTTL+IT++SG GC G Sbjct: 1736273 LGATKDDFDMTVGIHPTCSENFTTLDITRASGLDPGAKGC*G 1736398 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/50 (44%), Positives = 32/50 (64%) Frame = -1 Query: 9 YDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNV 58 YD +VIGGGSGG+A ++ AA G K +++Y + LGGTCV++ Sbjct: 398724 YDYLVIGGGSGGIASARRAALHGAKTALVEYQR---------LGGTCVSL 398602 Score = 43.1 bits (100), Expect = 4e-04 Identities = 18/25 (72%), Positives = 21/25 (84%) Frame = +2 Query: 5 TSYDYDLVVIGGGSGGLACSKEAAS 29 T YDYDL+V+GGGSGGLA SK+ S Sbjct: 1734290 TGYDYDLIVVGGGSGGLALSKQGQS 1734364 Score = 34.3 bits (77), Expect = 0.20 Identities = 13/32 (40%), Positives = 25/32 (78%) Frame = -2 Query: 56 VNVGCIPKKLMHQSSLIGELMHHDSANFGWNI 87 VNVGC+PKK+M ++ + E + HD+ ++G+++ Sbjct: 398453 VNVGCVPKKVMWNTASMAEAL-HDAPDYGFDV 398361 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -1 Query: 7 YDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVG 59 +D+D VV+G G GL + +S G K + + P+ T GG +G Sbjct: 218925 HDFDAVVVGAGGAGLRAAFGLSSQGFKTACITKLFPTRSHTVAAQGGINAALG 218767 >supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 Length = 955311 Score = 92.4 bits (228), Expect = 6e-19 Identities = 97/349 (27%), Positives = 152/349 (43%), Gaps = 7/349 (2%) Frame = -1 Query: 101 QLVANVDGYIRGINFKYKVELRSKYVKYENFLGSFVDAHTLELWHPRKGTKQITTRDVVI 160 +L+A D + G+ ++ L+ V Y G A + + G++ + + ++I Sbjct: 534732 KLMAAKDKAVTGLTGGVEMLLKKNKVDYVKGHGKITGAQEVTVDLLGGGSQVLKAKRILI 534553 Query: 161 AVGGRPKELTCPG---GEHAISSDDIFWMKKKEPGKTLVVGASYVALECAGFLKGMGYDV 217 A G PG E I S K P K +V+G + LE +G +V Sbjct: 534552 ATGSEVTPF--PGIAIDEQTIVSSTGALALKAVPKKMIVIGGGVIGLELGSVWSRLGAEV 534379 Query: 218 KVM--VRSILLRGFDQDMANKIGEYMEVQSGIEFIRKTVPQSITKLENGQLLVKWTTEDG 275 V+ + I G D ++A + Q G+ F T TK NG + V + DG Sbjct: 534378 TVVEFLGGIGGAGIDGEVAKNFQRVLTKQ-GLNFKLNTKVTGATKQANGSVKVNVESADG 534202 Query: 276 ESCEEA-FDTVLNATGRDPDVAKLGLDKARVKLNEKTGRIWVKNE-QTSTPNIYAIGDVI 333 E D +L A GR P LGL +A VK++ + GR+ V N T+ P+IYAIGDVI Sbjct: 534201 SVKETLDADVLLVAIGRRPYTNNLGLKEAGVKVDNR-GRVEVNNMFTTNVPSIYAIGDVI 534025 Query: 334 DAPELTPVAIQAGRLLSRRLYNNSTAQMDYDKICTAVFTPIEYGCCGLSEEDSKERYGED 393 P L A G L + +DY+ + + ++T E G +EE K D Sbjct: 534024 QGPMLAHKAEDEGILAVEGMCGGH-PHIDYNNVPSVIYTHPEVAWVGKTEEQLK----AD 533860 Query: 394 NIEVYHKNFVPLEWSLSEETRTAAESCYLKVICDKTRDKFVVGFHYLGP 442 +E Y P + +T + ++KV+ DK D+ ++G H +GP Sbjct: 533859 GVE-YTIGKFPFVANSRAKTNNDTDG-FVKVLGDKKTDQ-ILGAHIIGP 533722 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/34 (52%), Positives = 22/34 (64%) Frame = -3 Query: 51 LGGTCVNVGCIPKKLMHQSSLIGELMHHDSANFG 84 LGGTC+NVGCIP K + +S + HD AN G Sbjct: 534988 LGGTCLNVGCIPSKALLNNSHYYHMAQHDFANRG 534887 Score = 30.4 bits (67), Expect = 2.9 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -2 Query: 8 DYDLVVIGGGSGGLACSKEAASFGQKV 34 + DLVVIGGG GG + +A G KV Sbjct: 535223 ELDLVVIGGGPGGYVAAIKAGQLGLKV 535143 >supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 Length = 1380613 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 181 DDIFWMKKKEPGKTLVVGASYVAL 204 DD+ WM K+ G+TL+V Y AL Sbjct: 230289 DDVVWMGKRRMGRTLMVRECYPAL 230218 >supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 Length = 2526540 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -3 Query: 14 IGGGSGGLACSKEAASFGQKVCVLDYVKPS 43 I GG GGL CS AA+ VC ++KPS Sbjct: 1000228 IDGGLGGLVCSALAAATASGVCC--HIKPS 1000145 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.317 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,024,246 Number of Sequences: 89 Number of extensions: 300034 Number of successful extensions: 1600 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1302 Number of HSP's gapped (non-prelim): 613 length of query: 498 length of database: 9,347,932 effective HSP length: 104 effective length of query: 394 effective length of database: 9,338,676 effective search space: 3679438344 effective search space used: 3679438344 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 62 (28.5 bits)