TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= TR.Phytophthora_sojae.1 located on gi|113926705|gb|AAQY01000043.1|:subseq(83956,3493)strand - positions 3478,2000 (498 letters) Database: C.muris/genome.fa 84 sequences; 9,245,251 total letters Searching...................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|DS989740.1| Cryptosporidium muris RN66 scf_1106632353993 geno... 412 e-116 gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 geno... 67 7e-12 gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 geno... 28 3.6 gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno... 28 6.2 gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 geno... 28 6.2 gb|DS989734.1| Cryptosporidium muris RN66 scf_1106632354001 geno... 27 8.1 >gb|DS989740.1| Cryptosporidium muris RN66 scf_1106632353993 genomic scaffold, whole genome shotgun sequence Length = 196818 Score = 412 bits (1060), Expect = e-116 Identities = 239/508 (47%), Positives = 320/508 (62%), Gaps = 15/508 (2%) Frame = +1 Query: 6 SYDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPKKL 65 S+ YDL+VIGGGSGGLA +KEAA G+KV + DYVKPS QGT WGLGGTCVNVGC+PKKL Sbjct: 13345 SFMYDLIVIGGGSGGLAAAKEAARLGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKL 13524 Query: 66 MHQSSLIGELMHHDSANFGWNIASADGSASTFSWKQLVANVDGYIRGINFKYKVELRSKY 125 +H ++ IG ++HHD++N+G+ + STF W L+ V +++ +NF Y+ L S Sbjct: 13525 IHYAANIGTILHHDTSNYGFEV------TSTFRWSNLIQTVQNHVKSLNFSYRSGLFSSG 13686 Query: 126 VKYENFLGSFVDAHTLELWHPRKGTKQITTRDVVIAVGGRPK-ELTCPGG-EHAISSDDI 183 V+Y N L + D HT+ L+ + TT ++IAVGGRP + PG E+AI+SDDI Sbjct: 13687 VEYINSLANLEDRHTV-LFKRNNEIMKYTTEHILIAVGGRPNISESVPGALEYAITSDDI 13863 Query: 184 FWMKKKEPGKTLVVGASYVALECAGFLKGMGYDVKVMVRSILLRGFDQDMANKIGEYMEV 243 F + K PGKTL+VGASY+ LE AGFL +G++ V VRSI LRGFD+ + K+ M+ Sbjct: 13864 FSL-SKPPGKTLIVGASYIGLETAGFLTELGFEAIVAVRSIPLRGFDRQCSEKVVSMMK- 14037 Query: 244 QSGIEFIRKTVPQSITKLENGQLLVKWTTEDGESCEEAFDTVLNATGRDPDVAKLGLDKA 303 + G F+ VP +I K+++ +L V ++ E FDTV+ ATGR PD L L++ Sbjct: 14038 EYGTRFLEGVVPINIEKIDD-ELKVVFS----NGYTEQFDTVIYATGRYPDTKYLKLNEI 14202 Query: 304 RVKLNEKTGRIWVKNEQTSTPNIYAIGDVIDA-PELTPVAIQAGRLLSRRLYNNSTAQMD 362 V L +I N+ T+ PNI+AIGDV+D PELTPVAI+AG LL+RRL+ NS +D Sbjct: 14203 GVHLT-SNNKIIAPNDTTNIPNIHAIGDVVDGRPELTPVAIKAGILLARRLFGNSKEFID 14379 Query: 363 YDKICTAVFTPIEYGCCGLSEEDSKERYGEDNIEVYHKNFVPLEWSLS-----EETRTAA 417 Y I T +FTPIEYG G S E + YGED+IE Y F LE + S E +R + Sbjct: 14380 YKYIPTTIFTPIEYGSIGYSSEAAIAEYGEDDIEEYLFEFTTLEIAASHRYKVESSRMDS 14559 Query: 418 ESCYL------KVICDKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGFTYDQMVDTVGIH 471 Y+ K+I K+ D V+GFH++G NAGE+TQ LA+KLG +GIH Sbjct: 14560 GDFYMSPNSFAKLITVKSLDNKVIGFHFVGLNAGEITQGFSLAIKLGTKKSDFDSMIGIH 14739 Query: 472 PTTAETFTTLEITKSSGGT-TTGGGCUG 498 PT AE F+ L IT+ SG + GGC G Sbjct: 14740 PTDAEVFSDLSITRRSGESFIATGGCGG 14823 Score = 28.1 bits (61), Expect = 4.8 Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 2/106 (1%) Frame = -1 Query: 195 LVVGASYVALECAGFLK-GMGYDVKVMV-RSILLRGFDQDMANKIGEYMEVQSGIEFIRK 252 L++ +++++ GF K G D++ + ++ L+GFD+D GEY +V + + F + Sbjct: 7158 LILWITFLSVSIYGFTKMESGLDLRDLAPKTSYLQGFDRDFIQYFGEY-DVPTDVYF-PE 6985 Query: 253 TVPQSITKLENGQLLVKWTTEDGESCEEAFDTVLNATGRDPDVAKL 298 T+ +++ T E ES + D + N +P++AKL Sbjct: 6984 TLEWWKREVQERIFDFVLTLEKLESTKRVIDPLQNIIS-NPNLAKL 6850 >gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 genomic scaffold, whole genome shotgun sequence Length = 1306717 Score = 67.4 bits (163), Expect = 7e-12 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 3/197 (1%) Frame = +2 Query: 283 DTVLNATGRDPDVAKLGLDKARVKLNEKTGRIWVKNEQTST---PNIYAIGDVIDAPELT 339 D VL + GR P+ LGL+ V ++ + G I + +E NIYAIGDVI L Sbjct: 199091 DKVLLSVGRKPNTKNLGLENIGVNVDRR-GYIPIDHETYRVIPYSNIYAIGDVIGGQMLA 199267 Query: 340 PVAIQAGRLLSRRLYNNSTAQMDYDKICTAVFTPIEYGCCGLSEEDSKERYGEDNIEVYH 399 A + G ++ + N + + YD I T ++T E C G SE+D + ++ Sbjct: 199268 HKAEEEGIFVAEFIANGKQSPIHYDAIPTVIYTHPEIACVGFSEKDLILKQIPFKKGIFR 199447 Query: 400 KNFVPLEWSLSEETRTAAESCYLKVICDKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGF 459 N + R + + + + + K ++G + NAGE+ + LA + Sbjct: 199448 MN-------ANSRARVSGDVEGFVKVFEHSETKEILGSCIISANAGEIIHELALAYRYRA 199606 Query: 460 TYDQMVDTVGIHPTTAE 476 + + + HPT +E Sbjct: 199607 SCEDIARLCHAHPTLSE 199657 Score = 34.3 bits (77), Expect(2) = 4e-05 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 4/117 (3%) Frame = +1 Query: 51 LGGTCVNVGCIPKKLMHQSSLIGELMHHDSANFGWNIASADGSASTFSWKQLVANVDGYI 110 +GGTC+N GCIP K + +SL M + S W I D S + L + I Sbjct: 197671 IGGTCLNEGCIPSKTLLNASLQYWKMRNSSY---WGI---DTSYNRIDLDILQRRKNEVI 197832 Query: 111 RGINFKYKVELRSKYVKYENFLGSFVDAHTLELWHPRKGT----KQITTRDVVIAVG 163 + + K + + N +D T+ L P +I +++VIA G Sbjct: 197833 QQLRSGIKYLFSKNKIDFVNAEAKILDHSTIGLSKPVTFNGLEFSRINAKNIVIATG 198003 Score = 32.7 bits (73), Expect = 0.19 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 8 DYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQ 45 DYD+++IG G+ G + A+ G KV +L+ P P+ Sbjct: 971344 DYDVIIIGAGASGCVMANVYANKGLKVLLLERGGPRPE 971457 Score = 29.6 bits (65), Expect = 1.6 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Frame = +3 Query: 244 QSGIEFIRKTVPQSITKLENGQLLVKWTT-----EDGESCEEAFDTVLNATGRDPDVAKL 298 ++ IEF ++ + +I K +L + +SC + + T LN TGR + Sbjct: 859281 ENNIEFNKENIDMNINKNNISKLFSNLSIFYKDDMSPKSCWDTWYTYLNITGRKLKPEYV 859460 Query: 299 GLDKARVKLNEKTGRIWVKNEQTSTPNIY 327 +++ + + EK G W K + + N + Sbjct: 859461 AINEIFLNILEKRGCDWFKMKNETISNAF 859547 Score = 29.3 bits (64), Expect(2) = 4e-05 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +3 Query: 9 YDLVVIGGGSGGLACSKEAASFGQKVCVLD 38 YD+ +IG G GG + ++ G K V+D Sbjct: 197502 YDIAIIGAGPGGYVSALRSSQLGLKTVVID 197591 Score = 29.3 bits (64), Expect = 2.1 Identities = 20/79 (25%), Positives = 36/79 (45%) Frame = +1 Query: 208 GFLKGMGYDVKVMVRSILLRGFDQDMANKIGEYMEVQSGIEFIRKTVPQSITKLENGQLL 267 G G+GYD ++ R LL + ++ K + + + + R T+ +++T N ++ Sbjct: 616273 GIAIGLGYDTNILARGHLLASYIRN-GCKYSKLKLILNKDKGQRVTIDRTLTLSNNNEVR 616449 Query: 268 VKWTTEDGESCEEAFDTVL 286 W DG C E T L Sbjct: 616450 TLWKL-DGLKCNEKDITTL 616503 >gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 genomic scaffold, whole genome shotgun sequence Length = 367275 Score = 28.5 bits (62), Expect = 3.6 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%) Frame = -2 Query: 24 SKEAASFGQKVCVLDYVKPSPQGTSWGLGG-------TCVNVGCIPKKLM-HQSSLIGEL 75 +K +SFG K L + +P G S LGG ++ C+ K L+ +S + G+ Sbjct: 96098 NKFLSSFGIKFVTLMPIPANPNGLSQFLGGIPQFILVPADSLHCL*KHLLKFESRIPGDS 95919 Query: 76 MHHDSANF 83 HD+ NF Sbjct: 95918 CKHDNRNF 95895 >gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole genome shotgun sequence Length = 1324930 Score = 27.7 bits (60), Expect = 6.2 Identities = 17/42 (40%), Positives = 20/42 (47%) Frame = +3 Query: 89 SADGSASTFSWKQLVANVDGYIRGINFKYKVELRSKYVKYEN 130 S DGS S WK V +V GYI + KY + Y K N Sbjct: 291216 STDGSLS-IKWKYSVNSVKGYIALLQRKYNSDTSEYYSKSLN 291338 >gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 genomic scaffold, whole genome shotgun sequence Length = 772423 Score = 27.7 bits (60), Expect = 6.2 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +1 Query: 99 WKQLVANVDGYIRGINFKYKVELRSKYVKYENFLGSFVD 137 W L N GYIR ++Y E S NFL ++D Sbjct: 345307 WWILTVNEKGYIRDTTYRYTSEWVSVLNSRRNFLVDYMD 345423 >gb|DS989734.1| Cryptosporidium muris RN66 scf_1106632354001 genomic scaffold, whole genome shotgun sequence Length = 406819 Score = 27.3 bits (59), Expect = 8.1 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Frame = -3 Query: 64 KLMHQSSLIGELMHHDSANFGWNIAS----ADGSASTFSWKQLVANVDGYIRGI-NFKYK 118 KL+H SS++ ++H D+ N +I++ + S F ++++ V G I NF Y Sbjct: 206663 KLLHLSSILTTIVHFDNINNWIHISNNKLIIEFSCKIFLYRRITCRV*GLIYTCRNFLYS 206484 Query: 119 VELRSK 124 L S+ Sbjct: 206483 SGLESR 206466 Database: C.muris/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,245,251 Number of sequences in database: 84 Lambda K H 0.317 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,482,064 Number of Sequences: 84 Number of extensions: 60687 Number of successful extensions: 278 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 216 Number of HSP's gapped (non-prelim): 100 length of query: 498 length of database: 3,081,750 effective HSP length: 96 effective length of query: 402 effective length of database: 3,073,686 effective search space: 1235621772 effective search space used: 1235621772 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.9 bits)