TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= TR1 #anophagefferens # scaffold_11:subseq(783554,7436).pep (488 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000075.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 434 e-121 gb|ABWE01000835.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 219 6e-57 gb|ABWE01001242.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 132 5e-37 gb|ABWE01000605.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 65 2e-10 gb|ABWE01003496.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 65 3e-10 gb|ABWE01000612.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 49 2e-05 gb|ABWE01000290.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 33 1.3 gb|ABWE01000375.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 8.4 >gb|ABWE01000075.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont51.5, whole genome shotgun sequence Length = 90922 Score = 434 bits (1115), Expect = e-121 Identities = 236/497 (47%), Positives = 307/497 (61%), Gaps = 10/497 (2%) Frame = +3 Query: 2 FDYDXXXXXXXXXXLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLM 61 +DYD LACSKE A G KV VLD+VKPSP G++WGLGGTCVNVGCIPKKLM Sbjct: 26037 YDYDLVVIGGGSGGLACSKEAASFGKKVCVLDYVKPSPHGTSWGLGGTCVNVGCIPKKLM 26216 Query: 62 HTASIIGETLXXXXXXXXXXXXXXXXH----DWESMKSTVQDHIKSLNFKYRVALREAGI 117 H +S+IGE L DW+ + S V +IKS++FKY+V LR + Sbjct: 26217 HQSSLIGEILHHDCASFGWNVGSVNGQVPTFDWKQLVSNVSSYIKSISFKYKVELRSKQV 26396 Query: 118 TYLNRLGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLGCPGGEHAIDSDDLFSL 177 Y N LG F D +T+ L K +T ++AVGGRP +L C GGE A+ SDD+F + Sbjct: 26397 KYENVLGSFVDPHTLKLWHPKKGTKEITTRHVVIAVGGRPRQLACLGGELAVSSDDIFWM 26576 Query: 178 -PKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIK-HHG 235 K PG+ L VG Y+ALEC GF GMGY MVRSILLRGFD++ KI +++ G Sbjct: 26577 KQKEPGKTLVVGASYVALECAGFLKGMGYAVKVMVRSILLRGFDQDMASKIGEYMEMQSG 26756 Query: 236 VQLQVGVTPAKIEKDAATGVLT--VTDSGGGVHE-YDTVLVATGRYADTAALGIDNVPGA 292 ++ P I K + +L +T+ G E +DTVL ATGR D A LG+D A Sbjct: 26757 IEFIRKTVPQSITKLDSGQLLVKWITEDGDCFEETFDTVLNATGRDPDVAKLGLDE---A 26927 Query: 293 SANVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPM 352 +N KT ++ +EQ P+VYAIGDV++ PELTPVAI+AG L+RRL+ T M Sbjct: 26928 GVKLNEKTGRIWVNNEQTT-TPNVYAIGDVIDA-PELTPVAIQAGRLLSRRLYNEGTVQM 27101 Query: 353 DYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCF 412 DY+ + T +FTP+EYG GLSE+D+K + G+ +VE Y F PLE++L+E + C+ Sbjct: 27102 DYDKICTAVFTPIEYGCCGLSEEDSKEEYGDDSVEVYHKNFVPLEWSLAEQTRIAAESCY 27281 Query: 413 AKLVVDKSTGK-VVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSM 471 K+V DK+ V+GFHYLGPNAGE+TQ +AM+ G TY + TVGIHPT AE FT++ Sbjct: 27282 VKVVCDKTRNNFVLGFHYLGPNAGEVTQAMGLAMKLGFTYDQLVDTVGIHPTTAEAFTTL 27461 Query: 472 TVTKSSGESAAKGGCUG 488 TKSSG+S GGC G Sbjct: 27462 ETTKSSGDSTTGGGC*G 27512 >gb|ABWE01000835.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont130.5, whole genome shotgun sequence Length = 26476 Score = 219 bits (559), Expect = 6e-57 Identities = 158/474 (33%), Positives = 232/474 (48%), Gaps = 6/474 (1%) Frame = -2 Query: 4 YDXXXXXXXXXXLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLM-H 62 YD +A ++ A GAKV V++ + GLGGTCVN GC+PKK+M + Sbjct: 7131 YDYIVIGGGSGGMASARRAATYGAKVLVIERGRQYDG---MGLGGTCVNFGCVPKKIMFN 6961 Query: 63 TASIIGETLXXXXXXXXXXXXXXXXHDWESMKSTVQDHIKSLNFKYRVALREAGITYLNR 122 TA+ + DW MK+ +I L Y+ L A + ++ Sbjct: 6960 TAAHVEHLNRAKDYSIHTAEFAFGDFDWSKMKTKRDAYINRLTGIYQRNLGNARVDHVEG 6781 Query: 123 LGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLGCPGGEHAIDSDDLFSLPKAPG 182 + +F KN + + D+ T ++A GG P K PG H IDSDD F L + P Sbjct: 6780 IAKFVAKNKVQVADRV-----FTGKHVLIAPGGVPLKPDLPGINHVIDSDDFFRLEQQPQ 6616 Query: 183 RVLCVGGGYIALECGGFTAGMGYPTTCMVR-SILLRGFDRECVGKIEAHIKHHGVQLQVG 241 +V VG GYIA+E G + TT R +LR F+ + ++ GV Sbjct: 6615 KVAVVGAGYIAVEMAGIFHALKSDTTLFCRHDQVLRRFEPIVRDLVNEEMEKAGVTFVRN 6436 Query: 242 VTPAKIEKD---AATGVLTVTDSGGGVHEYDTVLVATGRYADTAALGIDNVPGASANVNA 298 ++ +EK T V+ V + ++DT+L A GR T LG++++ G A Sbjct: 6435 MSAVGVEKQLDGKLTLVVNVHNEEQKFTDFDTILFAVGRKPRTEDLGLEDI-GVKL---A 6268 Query: 299 KTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEP-MDYECV 357 + ++ ++ P VYAIGD ELTPVAI AG RLA RLFGG+ + ++Y + Sbjct: 6267 EGGFIQVDAQENTSVPGVYAIGDATVTGWELTPVAIAAGRRLADRLFGGEKDACLNYHQI 6088 Query: 358 ATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVV 417 + IF+ GTIG +E +A A+ GE NV+ Y S+F L +++++ E KLV Sbjct: 6087 PSVIFSHPPIGTIGYTEPEAVAKYGEENVKVYTSKFVNLLHSMAD--PEHKGKTAMKLVT 5914 Query: 418 DKSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSM 471 VVG H G A E+ QGF +A++ AT ADF + V IHPT +EE +M Sbjct: 5913 VGEQETVVGVHVAGEGADEMIQGFGVAVKMNATKADFDNIVAIHPTASEELVTM 5752 >gb|ABWE01001242.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont26.2, whole genome shotgun sequence Length = 16867 Score = 132 bits (333), Expect(2) = 5e-37 Identities = 96/262 (36%), Positives = 137/262 (52%), Gaps = 8/262 (3%) Frame = -2 Query: 235 GVQLQVGVTPAKIEKDAATGVLTVTDSGGGVH-EYDTVLVATGRYADTAALGIDNVPGAS 293 G+ L+ A++E+ AA G T+ + G H +D V+ A GR T L +DN G + Sbjct: 6558 GLHLRPNSNVARVEQ-AADGTNTLVLTDGSAHCGFDIVIYAAGRVPLTDKLDLDNA-GVA 6385 Query: 294 ANVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGG-KTEPM 352 N K + + Q V+A+GDV G P LTPVA+ AG +L+ RLFG K + Sbjct: 6384 TN---KHGYIVVNEFQETSNSKVFAVGDVC-GTPALTPVAVAAGRKLSDRLFGNMKDARV 6217 Query: 353 DYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYAL-SETRSERGD-- 409 YE + T +F+ GTIGL+E A+ + G+ +++ Y S F + Y L +E G+ Sbjct: 6216 SYENIPTVVFSHPPIGTIGLTEKQAQGKYGDDDIKVYTSHFVNMYYGLINEVDEATGELK 6037 Query: 410 ---GCFAKLVVDKSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAE 466 KLV KVVG H +G A EI QGF +A++ GAT ADF + + IHPT +E Sbjct: 6036 EKPKTAIKLVCAGKKEKVVGLHMIGMAADEILQGFGVAVKMGATKADFDNCIAIHPTASE 5857 Query: 467 EFTSMTVTKSSGESAAKGGCUG 488 E ++ SG AK C G Sbjct: 5856 ELVTLAPWGLSGYE*AKWICNG 5791 Score = 42.0 bits (97), Expect(2) = 5e-37 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 164 GGEHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSI-LLRGFD 220 G E IDSD F L P +V +G GYIA+E G +G T+ R +LR FD Sbjct: 6842 GKELCIDSDGFFELDTLPKKVAVIGAGYIAVELAGVLNALGSETSIFCRKEGVLRTFD 6669 Score = 41.6 bits (96), Expect = 0.003 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 8/128 (6%) Frame = -3 Query: 3 DYDXXXXXXXXXXLACSKECAKL-GAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLM 61 +YD +A ++ A +VAV++ + LGGTCVNVGC+PKKLM Sbjct: 7514 EYDYLVIGGGSGGIASARRAASYPNTRVAVVEHAR---------LGGTCVNVGCVPKKLM 7362 Query: 62 HTASIIGETL-------XXXXXXXXXXXXXXXXHDWESMKSTVQDHIKSLNFKYRVALRE 114 A+ + L DW +K+ +++ LN Y RE Sbjct: 7361 FLAADMSHKLQHDVVHYGFEKEGTGGSLGAQMHFDWTKLKTRRDAYVRRLNGIYERWERE 7182 Query: 115 AGITYLNR 122 I +NR Sbjct: 7181 --IVAVNR 7164 >gb|ABWE01000605.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont52.3, whole genome shotgun sequence Length = 34187 Score = 65.1 bits (157), Expect = 2e-10 Identities = 48/172 (27%), Positives = 85/172 (49%) Frame = -2 Query: 297 NAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYEC 356 ++K+ ++ CV Q +A+ ++ R P A E G+ + GK ++Y Sbjct: 34153 DSKSHEVTCVQTQY----QCFAMET*LKAR--CCPQAREEGIACVENI-AGKHGHVNYGA 33995 Query: 357 VATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLV 416 + I+T E+ ++G +E++ KA+ VE + +F + + + T +E DG K++ Sbjct: 33994 IPNVIYTFPEFASVGKTEEELKAE----GVEYNVGKFPMMANSRARTVAE-ADG-MVKVL 33833 Query: 417 VDKSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEF 468 DK T K++G H + NAGE+ I + GA D T HPT++E F Sbjct: 33832 ADKKTDKLLGVHIIASNAGEMISEGVIGIEYGAASEDLARTCHAHPTLSEAF 33677 >gb|ABWE01003496.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont52.4, whole genome shotgun sequence Length = 1688 Score = 64.7 bits (156), Expect = 3e-10 Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 7/237 (2%) Frame = -1 Query: 3 DYDXXXXXXXXXXLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKK-LM 61 DYD + + A+LG K A ++ S LGGTC+NVGCIP K L+ Sbjct: 773 DYDLVVIGGGPGGYVAAIKAAQLGLKTACVE--------SRGKLGGTCLNVGCIPSKALL 618 Query: 62 HTASIIGETLXXXXXXXXXXXXXXXXHDWESMKSTVQDHIKSLNFKYRVALREAGITYLN 121 H+ ++ ++ M + +++L + +TY+ Sbjct: 617 HSTHLLHTA--QHEFKSYGIDAPNVTANFPQMMKAKEKAVRTLTAGIESLFSKNKVTYIK 444 Query: 122 RLGEFEDKNTISLT--DKKGNKTSVTAARFIVAVGGRPNKL-GCPGGEHA---IDSDDLF 175 +G+ K +S+T D++GN T +TA I+A G L P A +DS Sbjct: 443 GVGKLAAKGQVSVTLADRQGNGT-LTAKNIILATGSEVTPLPPVPVDNDAGKIVDSTGAL 267 Query: 176 SLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIK 232 +L + P ++ VG G I LE G +G T ++ D C G + +K Sbjct: 266 ALTRVPEHLVVVGAGVIGLELGSVYKRLGAKVT------VVEYLDSACSGMDKGAVK 114 >gb|ABWE01000612.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont275.1, whole genome shotgun sequence Length = 33811 Score = 48.5 bits (114), Expect = 2e-05 Identities = 53/211 (25%), Positives = 77/211 (36%), Gaps = 19/211 (9%) Frame = -3 Query: 4 YDXXXXXXXXXXLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHT 63 YD C+ + AK G +VA++D LGG CV+ G IP K Sbjct: 13823 YDLVVIGSGPSATQCALDSAKQGKRVAIVD--------KKTRLGGVCVHTGTIPSKTFRE 13668 Query: 64 ASIIGETLXXXXXXXXXXXXXXXXHDWESMKSTVQDHIKSLNFKYRVALREAGITYLNRL 123 A + E + VQ + S R L+ A + + Sbjct: 13667 AVL--HLSGYRHHGFYGKSYSMKTVTIEDILYRVQRVVSSEEDVVRAQLKAARVDVIPGF 13494 Query: 124 GEFEDKNTISLTDKKGNK---------------TSVTAARFIVAVGGRP--NKLGCPGGE 166 FE + IS+ + K T V A +F+VA G RP N L G+ Sbjct: 13493 ARFESAHEISIVKEGAAKDKAETGQCSNNMDARTRVRADKFLVACGTRPAHNPLVPIDGK 13314 Query: 167 HAIDSDDLF--SLPKAPGRVLCVGGGYIALE 195 IDSD + + + P ++ VG G I +E Sbjct: 13313 IVIDSDQILKRGMQQLPRSLIVVGAGVIGME 13221 Score = 42.4 bits (98), Expect = 0.002 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 10/162 (6%) Frame = -1 Query: 317 YAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATT----------IFTPLE 366 YA GD + G P L ++E G RL +D E T+ I+T E Sbjct: 12637 YAAGDCI-GAPALASTSMEQG-----RLASCHMWEVDEEHAGTSQLENGNYPYGIYTIPE 12476 Query: 367 YGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKSTGKVVG 426 +G +E N E I++++ E A + G K++ D T KV+G Sbjct: 12475 ISMVGQTEQQLTKDC--VNYEIGIAKYS--ELAKGQMMGAMAGGTL-KILFDPDTLKVLG 12311 Query: 427 FHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEF 468 H +G A EI +AM G + F V +PT+AE + Sbjct: 12310 VHAIGEGATEIIHIGQVAMAMGCSLTYFRDAVFNYPTLAEAY 12185 >gb|ABWE01000290.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont22.4, whole genome shotgun sequence Length = 52974 Score = 32.7 bits (73), Expect = 1.3 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 15/167 (8%) Frame = +3 Query: 317 YAIGDVVEGRPELTPVAIEAGLRLARRLFGGKT---------EPMDYECVATTIFTPLEY 367 YA GD++ G P L ++E G + + K+ + MD T E Sbjct: 52056 YAAGDII-GFPALASTSMEQGRLASVHMRTSKSFYTKEISDDKKMDDPDRVRTRMRSGEV 52232 Query: 368 GTIGLSEDDAKAQLGECNVESYISEFAPLEYA------LSETRSERGDGCFAKLVVDKST 421 G+ + +G+ N + E P E L++ + G F K++ T Sbjct: 52233 FPFGIYTVPEISMVGK-NEQQLTREQVPYEVGIARYEELAKGQMLGGVPGFLKIIFCPKT 52409 Query: 422 GKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEF 468 K++G H +G A EI + M T F + V +PT+AE + Sbjct: 52410 LKLLGVHAIGEGATEIIHIGQVVMSTDGTLEYFRNAVFNYPTLAEAY 52550 >gb|ABWE01000375.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont23.1, whole genome shotgun sequence Length = 46431 Score = 30.0 bits (66), Expect = 8.4 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Frame = -1 Query: 344 LFGGKTEPMDYECVA-TTIFTPLEYGTIGLSE-------DDAKAQLGECNVESYISEFAP 395 L G + + D VA TT +PLE + G + D ++ ++ E V S Sbjct: 3075 LVGRRPKDRDLAKVARTTSLSPLEPSSKGSNSTGDEGPPDPSERRIDEARVADA*SFEVF 2896 Query: 396 LEYALSETRSERGDGCFAKLVVDKSTGKVVGFHYLGPNAGEIT 438 L+ A +TR++ GC A L + + KV F L P GE+T Sbjct: 2895 LDGA--DTRADFRRGCLAILYEEGRSSKVGPFPELDPLGGEVT 2773 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.317 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,306,432 Number of Sequences: 5422 Number of extensions: 489194 Number of successful extensions: 1779 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 267 Number of HSP's successfully gapped in prelim test: 58 Number of HSP's that attempted gapping in prelim test: 1438 Number of HSP's gapped (non-prelim): 491 length of query: 488 length of database: 22,486,378 effective HSP length: 109 effective length of query: 379 effective length of database: 21,895,380 effective search space: 8298349020 effective search space used: 8298349020 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 65 (29.6 bits)