TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= TR1 #anophagefferens # scaffold_11:subseq(783554,7436).pep (488 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl... 202 2e-52 dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 141 5e-34 dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp... 110 1e-24 dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp... 87 1e-17 dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 41 0.001 dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, compl... 34 0.15 dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl... 28 6.3 >dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete sequence Length = 481791 Score = 202 bits (514), Expect = 2e-52 Identities = 157/490 (32%), Positives = 226/490 (46%), Gaps = 12/490 (2%) Frame = -1 Query: 2 FDYDXXXXXXXXXXLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLM 61 FD+D + ++ A GA+VA+ + + LGGTCVNVGCIPKKL Sbjct: 106413 FDFDLFVIGGGSGGVRAARVSANHGARVALAESSR---------LGGTCVNVGCIPKKLF 106261 Query: 62 HTASIIGETLXXXXXXXXXXXXXXXXH--DWESMKSTVQDHIKSLNFKYRVALREAGITY 119 S DWE + I+ LN Y+ L +A + Sbjct: 106260 SYGSHYLHEFEDARAYGWDLPTKSELDPVDWERLIHNKDAEIERLNGVYQRILEKANVRI 106081 Query: 120 LNRLGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLG-CPGGEHAIDSDDLFSLP 178 + EF D + I L + + +A +VAVGGR N + PG I SDD F L Sbjct: 106080 FHERAEFVDAHKIRLASGE----TFSAKYILVAVGGRSNLIADLPGAALCIHSDDCFYLK 105913 Query: 179 KAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRS-ILLRGFDRECVGKIEAHIKHHGVQ 237 P +L +GGGYI E G G T + R + LRGFD + + ++ G+ Sbjct: 105912 HLPRSILVLGGGYIGTEFACIFHGYGSKVTQVHRGKLFLRGFDDDVRHFLAEQMRKDGID 105733 Query: 238 LQVGVTPAKIEK--DAATG---VLTVTDSGGGVHEYDTVLVATGRYADTAALGIDNVPGA 292 L+ G +E DA+ VL + G D VL+A GR+ +T LG++ A Sbjct: 105732 LRFGCNLKAVEAIPDASAPEGRVLKAHLTDGSTLIVDQVLLAVGRHPNTEGLGLER---A 105562 Query: 293 SANVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPM 352 + + + +YA+GDV R LTPVAI G A +FGGK Sbjct: 105561 GIKTDQHRGHILVDEYSRTNVETIYAVGDVTN-RMNLTPVAIAEGHCFADTVFGGKARAP 105385 Query: 353 DYECVATTIFTPLEYGTIGLSEDDAK---AQLGECNVESYISEFAPLEYALSETRSERGD 409 Y+ V T +F+ G +GL+E A+ A+ G ++ Y S F PL++ L++ R Sbjct: 105384 GYDMVPTAVFSVPPIGMVGLTEARARELDAEQGGTGIDIYRSMFRPLKHTLTK----RDR 105217 Query: 410 GCFAKLVVDKSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFT 469 KLVVD+ T +V+G H + A EI Q +IA++ GAT ADF + +G+HPT AEE Sbjct: 105216 QTLMKLVVDRRTQRVLGCHLVDDAAPEIIQSVAIALKMGATKADFDNVIGVHPTSAEELV 105037 Query: 470 SMTVTKSSGE 479 +M S G+ Sbjct: 105036 TMREKVSDGK 105007 >dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete sequence Length = 866983 Score = 141 bits (356), Expect = 5e-34 Identities = 121/459 (26%), Positives = 201/459 (43%), Gaps = 13/459 (2%) Frame = +3 Query: 21 ECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASIIGETLXXXXXXXXX 80 + A+LG K A ++ LGGTC+NVGCIP K + +S + E Sbjct: 757371 KAAQLGLKTACVE--------KRGSLGGTCLNVGCIPSKALLHSSHLYEEAKHAFPTHGI 757526 Query: 81 XXXXXXXHDWESMKSTVQDHIKSLNFKYRVALREAGITYLNRLGEFEDKNTISLTDKKGN 140 + +M + ++ L ++ +TY+ G+ I + + Sbjct: 757527 RIEGKVTLELPAMMKQKMNSVRGLTKGIEALFKKNQVTYVKGTGKLASATQIKVRPPDSD 757706 Query: 141 KTS--VTAARFIVAVGGRPNKLGC-PGGE-HAIDSDDLFSLPKAPGRVLCVGGGYIALEC 196 + + + A I+A G P L P E + S SLP P R+ +GGGYI LE Sbjct: 757707 EFAQEIHAKNIIIATGSEPVALPMLPFDEKRVVSSTGALSLPTIPQRMAVIGGGYIGLEM 757886 Query: 197 GGFTAGMGYPTTCM-VRSILLRGFDRECVGKIEAHIKHHGVQLQVG--VTPAKIEKDAAT 253 G +G T + ++ D E + +K G++ ++G VT AKI + + Sbjct: 757887 GSVWRRLGAEVTVIEFTDRIVPAMDHEIGDRFLQILKKQGLKFKLGTKVTGAKIPAEPSP 758066 Query: 254 GVLTVTDSGGG----VHEYDTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDEQ 309 L + + + D VLVATGR TA LG++ + G + + + D Sbjct: 758067 VTLELESAKDSSKKETFDADVVLVATGRRPYTAELGLEAL-GIELDDRGR---IPIDDAF 758234 Query: 310 LPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIFTPLEYGT 369 P++YAIGDVV G L A + G+ A + G K ++Y+C+ ++T E + Sbjct: 758235 RTRVPNIYAIGDVVRGAM-LAHKAEDEGIACAETIAGHKAH-LNYDCIPGVVYTHPEVAS 758408 Query: 370 IGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGC--FAKLVVDKSTGKVVGF 427 +G +E++ KA + F + + + T GD K++ +K T +++G Sbjct: 758409 VGKTEEELKA----AGIAYNKGTFPFMANSRARTNDAGGDFTQGLVKVLAEKQTDRILGL 758576 Query: 428 HYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAE 466 H +GP AGE+ +AM GA+ D T HPT++E Sbjct: 758577 HIIGPGAGEMIAEGVLAMEYGASSEDIARTCHAHPTLSE 758693 >dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete sequence Length = 1232258 Score = 110 bits (276), Expect = 1e-24 Identities = 128/505 (25%), Positives = 195/505 (38%), Gaps = 40/505 (7%) Frame = -2 Query: 2 FDYDXXXXXXXXXXLACSKECAKLGAKVAVLDFVKPSPAGSTWG-LGGTCVNVGCIPKKL 60 +DYD + G K AVL T G GGTCVN GC+P K Sbjct: 590743 YDYDLVIIGAGVGGHGAALHARSRGLKTAVL----------TGGDAGGTCVNRGCVPSKA 590594 Query: 61 MHTASIIGETLXXXXXXXXXXXXXXXXHDWESMKSTVQDHIKSLNFKYR----VALREAG 116 + A+ L D++ + V +H SL + R +LR G Sbjct: 590593 LLAAAGKVRELRTVERLQAMGISVRGQVDYD--RQAVSNHANSLASRVRGNLVQSLRGLG 590420 Query: 117 ITYLNRLGEFEDKNTISLTD--KKGNKTSVTAARFIVAVGGRPNKLGCPG----GEHAID 170 + L+ G + L ++ + VTA ++A G P PG G+ Sbjct: 590419 VDVLDARGALVAPQKVELLKPRERTGERVVTARDVVIATGSVPAVP--PGIQVDGKTVFT 590246 Query: 171 SDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAH 230 SDD L P + +G GYI LE +G T + + L + +A Sbjct: 590245 SDDALKLEWVPEWIAIIGSGYIGLEFSDVYTALGSEVTFIEAAPKL-------MPSFDAE 590087 Query: 231 IKHHGVQLQVGVTPAKIEKDAATGVLTV--------------------TDSGGGVHEYDT 270 I + +L + P DA TGVL T + V + D Sbjct: 590086 ISRYAERLLISPRPV----DAYTGVLATKVVPGIPGQKPVHIELVNAETKAPVEVLQVDA 589919 Query: 271 VLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDEQL-----PGAP--HVYAIGDVV 323 LVATGR T LG++ + G N K VD+ + GAP H+Y IGD Sbjct: 589918 ALVATGRRPYTDGLGLEKL-GVRLN-----KGFVPVDDHMRVLDETGAPIEHLYCIGDA- 589760 Query: 324 EGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIFTPLEYGTIGLSEDDAKA--QL 381 G+ L A G+ + + G + + EC+ FT E +G +E+ A+A + Sbjct: 589759 NGKLMLAHAASAQGISVVEHIAGNTSYRLRMECIPAACFTHPEISMVGFTEEQARAIAER 589580 Query: 382 GECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKSTGKVVGFHYLGPNAGEITQGF 441 + + F AL+E +E AK++ K TG+++G H +G +A ++ Sbjct: 589579 ERFELGKALGHFRANSKALAENHAEG----IAKVLFRKDTGELLGMHIIGMHAADLIHEA 589412 Query: 442 SIAMRKGATYADFISTVGIHPTVAE 466 + AM+ G V HPT++E Sbjct: 589411 ANAMQTGIPVHKLAFAVHTHPTLSE 589337 >dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete sequence Length = 839707 Score = 87.0 bits (214), Expect = 1e-17 Identities = 116/468 (24%), Positives = 190/468 (40%), Gaps = 17/468 (3%) Frame = +2 Query: 16 LACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKK-------LMHTASIIG 68 +A + A+ GA+V V++ +GGTCVNVGCIP K L H + Sbjct: 47099 MAAAITAAERGAQVHVVE---------RGTIGGTCVNVGCIPSKHLVRCGQLEHWCELHK 47251 Query: 69 ETLXXXXXXXXXXXXXXXXHDWESMKSTVQDHIKSLNF-KYRVALRE-AGITYLNRLGEF 126 D +++ Q ++ L + KY L E IT + F Sbjct: 47252 HQTVSNAVNGCPCPGML---DAPKLRTARQALVEQLRYQKYERVLGENPRITTWHGEARF 47422 Query: 127 EDKNTISLTDKKGNKTSV-TAARF---IVAVGGRPNKLGCPGGEHAI--DSDDLFSLPKA 180 D ++ + + + V T RF ++AVG P G S + + + Sbjct: 47423 HDPQSVWVRTTADDGSRVDTLLRFDRCLIAVGAAPCIPPIDGLAEVPFWTSTEALASDQI 47602 Query: 181 PGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHG-VQLQ 239 P R+ +G +ALE A +G + R L D + A + G ++++ Sbjct: 47603 PRRLAVIGSSAVALELAQAYARLGSRVWILARHGLCTRTDPLVGDTLGAALVSDGRIEIR 47782 Query: 240 VGVTPAKIEKDAATGVLTVT-DSGGGVHEYDTVLVATGRYADTAALGIDNVPGASANVNA 298 ++ G+ T+T DS E D +LVA GR +TAAL +D A + +A Sbjct: 47783 CHTRVERVRY--RDGLFTMTLDSQETSVEVDALLVACGRRPNTAALQLD---AAGVHWDA 47947 Query: 299 KTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVA 358 + + D P++YA GD P+L VA AG R A ++ GG + +D V Sbjct: 47948 ASGTVPVNDRMQTNVPNIYAAGDCT-NMPQLVYVAAAAGTRAAIQMTGGDAK-LDLSLVP 48121 Query: 359 TTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVD 418 IFT + +GL+E +A A + V + P E F K+V D Sbjct: 48122 WVIFTDPQVAAVGLTEAEAHALGLQTQVRTLPVTNVPRSIVHGEKYG------FLKVVAD 48283 Query: 419 KSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAE 466 ++ +++G + A ++ ++AMR G T D + + T +E Sbjct: 48284 ITSKRILGAQAVASEASDMIATVAVAMRGGLTVPDLAELLIPYLTASE 48427 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 41.2 bits (95), Expect = 0.001 Identities = 69/254 (27%), Positives = 98/254 (38%), Gaps = 27/254 (10%) Frame = -3 Query: 128 DKNTISLTDKKGNKTSVTAARFIVAVGGRP---NKLGCPG----GEHAI----DSDDLFS 176 D N+ LT K G+K + ++A G ++LG G G H + ++D L+ Sbjct: 1024933 DLNSKCLTAKDGSKYGY--GKLLIATGSDALHLDELGMQGAHLGGIHYLREIAEADKLYE 1024760 Query: 177 LPKAPG--RVLCVGGGYIALECGGFTAGMGYPTTCMVRS--ILLRGFDRECVGKIEAHIK 232 KA + VGGGYI LEC G T + ++ R F E E Sbjct: 1024759 AMKACAGKHAVVVGGGYIGLECTAALVINGVRVTMVFPEPHVMARLFTPEIAAHYERIYA 1024580 Query: 233 HHGVQLQVG-VTPAKIEKDAATGVLTVTDSGGGVHEYDTVLVATGRYADTAALGIDNVPG 291 GV G V + +++ + V V G V E D V+V G T L G Sbjct: 1024579 QKGVNFIKGTVVDSFADENGSGQVKYVRLKNGPVLEADLVVVGVGAKPRTTLL-----EG 1024415 Query: 292 ASANVNAKTKKLECVDEQL-PGAPHVYAIGDVVE----------GRPELTPVAIEAGLRL 340 A A + A+ K VD L V+ GDV+ R E A ++ + Sbjct: 1024414 ALA-MEARGIK---VDGHLRTSHADVFGAGDVITFPLKMYGNRMARVEHVGHARQSAMHA 1024247 Query: 341 ARRLFGGKTEPMDY 354 + G TEP DY Sbjct: 1024246 VDVMMGATTEPYDY 1024205 >dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, complete genome, complete sequence Length = 457013 Score = 33.9 bits (76), Expect = 0.15 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = -3 Query: 19 SKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCI 56 S A+ K +V D V SP STWG G+CV++GC+ Sbjct: 108945 SGSAAETSMKSSVRDAV--SPEASTWGTLGSCVSLGCL 108838 >dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete sequence Length = 739753 Score = 28.5 bits (62), Expect = 6.3 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%) Frame = -1 Query: 377 AKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKS------TGKVVGFHYL 430 +++ + C ++ I A + + T E DG F + +D+S T +VV Sbjct: 278497 SRSCIRSCLRDASIYGAAAIGVPVKATIKESEDGQFVRRTIDRSRLWEIQTPQVV----- 278333 Query: 431 GPNAGEITQGFSIAMRKGATYADFISTV 458 A + QGF AMR+G D +S V Sbjct: 278332 --RARLLRQGFENAMRRGLRVTDDVSVV 278255 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.317 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,398,581 Number of Sequences: 20 Number of extensions: 148738 Number of successful extensions: 752 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 689 Number of HSP's gapped (non-prelim): 186 length of query: 488 length of database: 5,515,582 effective HSP length: 100 effective length of query: 388 effective length of database: 5,513,582 effective search space: 2139269816 effective search space used: 2139269816 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 60 (27.7 bits)