TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete (754 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic s... 199 4e-54 gb|GL291013.1| Polysphondylium pallidum PN500 unplaced genomic s... 139 6e-33 gb|GL291024.1| Polysphondylium pallidum PN500 unplaced genomic s... 71 3e-12 gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic s... 32 1.9 gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic s... 32 1.9 gb|GL290989.1| Polysphondylium pallidum PN500 unplaced genomic s... 31 4.2 gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 7.2 >gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig15, whole genome shotgun sequence Length = 727357 Score = 199 bits (507), Expect(2) = 4e-54 Identities = 137/385 (35%), Positives = 207/385 (53%), Gaps = 2/385 (0%) Frame = -3 Query: 283 AKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFG 342 A+ AA G KV +++ +GGTCVNVGC+PKK+M AA + +AL + +G Sbjct: 504032 ARRAAKYGVKVGLIE---------KTRMGGTCVNVGCVPKKVMWNAATIKEALHAAPFYG 503880 Query: 343 WEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKG 402 +E +V ++W T+ K +I+ LN Y L V +N +G+F +++ + Sbjct: 503879 FEGADKVTYHWPTIKKNRDAYIARLNGIYNNMLAGSNVKSINGWGKFTGPRQLEVDGQ-- 503706 Query: 403 QETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAG 462 YTA +IATG P+ + G E ITSD F L P V+GA Y+A+E G Sbjct: 503705 ---VYTADNILIATGGYPQIPQVPG-AELGITSDGFFDLAELPKSVAVIGAGYIAVELVG 503538 Query: 463 FLAGFGLDVTVMVR-SILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGK 521 L G ++++R LR FD +A K+ M G+ + + L K G+ Sbjct: 503537 ILNTLGSKSSLVIRHDHFLRTFDDIVAHKLQEQMVTDGINIVTN---STISALRKTENGQ 503367 Query: 522 LKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNV 581 + V+ TE +TV+ AIGRD T+ IGLE GV +NE+ G I V++ + T Sbjct: 503366 IVVVTNHTELPPV-----DTVIWAIGRDPSTKGIGLEAAGVSVNER-GYIKVDEFQYTGA 503205 Query: 582 PYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLE-KCDYINVPTTVFTPLEYGCCGL 640 V+AVGD+ +K ELTPVAI +G+ LA+RLF K DY N+P+ VF+ G GL Sbjct: 503204 QGVFAVGDVTGNK-ELTPVAIAAGRRLAERLFNKQEGLKFDYENIPSVVFSHPPIGTVGL 503028 Query: 641 SEEKAIEVYKKENLEIYHTLFWPLE 665 +E++AI Y KEN+++Y++ + L+ Sbjct: 503027 TEKEAIAKYGKENVKVYNSRYVNLQ 502953 Score = 32.0 bits (71), Expect(2) = 4e-54 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -1 Query: 657 YHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCG 714 Y+ F + + V + K+I + ++V+G H +G + E+ QGFA A+K G Sbjct: 502888 YYCSFTNMYYAVVDDYKPKTFMKLIVTGKE-EKVVGIHSIGIGSDEMIQGFAVAIKMG 502718 >gb|GL291013.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig16, whole genome shotgun sequence Length = 228641 Score = 139 bits (351), Expect = 6e-33 Identities = 121/455 (26%), Positives = 210/455 (46%), Gaps = 7/455 (1%) Frame = -2 Query: 285 EAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKK-LMHQAALLGQALCDSRKFGW 343 +A LG KV V++ LGGTC+NVGCIP K L++ + A +G Sbjct: 168982 KAGQLGMKVTVVE--------KRGKLGGTCLNVGCIPSKALLNASHKYEDAKTKFANYGV 168827 Query: 344 EYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQ 403 + V + M K + ++ L G ++ V Y +G+ + ++ T + G+ Sbjct: 168826 KVGS-VELDLAAMMKYKEKSVNGLTSGIEGLFKKNKVTYAKGHGKITGPNTVEVTGEDGK 168650 Query: 404 ETYYTAAQFVIATGERPRYL-GIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAG 462 T VIATG L + D++ ++S +L P + +V+G + LE Sbjct: 168649 VQTITTKNIVIATGSEVASLPNVNIDEQTIVSSTGALALKAVPKRMVVIGGGVIGLELGS 168470 Query: 463 FLAGFGLDVTVM-VRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGK 521 + G + TV+ + + G D E+A+K +E+ +KF + V + K + G Sbjct: 168469 VWSRLGAETTVVEFTNRIAAGADGEVAKKFQKVLEKQHMKF---HLETKVTSVVKNANGT 168299 Query: 522 LKVLAKSTEGTETIEGVY--NTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQT 579 + V +S G G + VL+++GR T +GL+K+GV + +K+G++ V D +T Sbjct: 168298 VTVTVESV-GAGGFSGQIEADVVLVSVGRRPNTTNLGLDKVGVPM-DKAGRVEVGDHFKT 168125 Query: 580 NVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCG 639 NV +YA+GD ++ P L A + G + + L S +Y +P+ ++T E G Sbjct: 168124 NVKSIYAIGDAIKG-PMLAHKAEEEGIAVMEYLHNGS-GHVNYAAIPSVIYTHPEVAWVG 167951 Query: 640 LSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTC--YAKIICNKFDHDRVIGFHILG 697 +EE+ + K N+ + P R N+ + K + + DR++G HI+G Sbjct: 167950 KTEEELTKEGIKFNVGKF-----PYAANSRARTNDESEGFVKFLSDS-STDRILGVHIMG 167789 Query: 698 PNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732 AGE+ AM+ G + + + T HPT E Sbjct: 167788 DCAGEMIAESVLAMEYGASSEDVARTCHAHPTLSE 167684 >gb|GL291024.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig27, whole genome shotgun sequence Length = 200704 Score = 71.2 bits (173), Expect = 3e-12 Identities = 32/72 (44%), Positives = 49/72 (68%) Frame = -1 Query: 173 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 232 LI+ ++V+FSKS CP+ RVK L + LG +V+E+DQ+ + + Q LS I+N TVP Sbjct: 71608 LIQAHKLVVFSKSTCPYCIRVKSLLTKLGQHPHVVEIDQLPNTSEYQRALSTISNITTVP 71429 Query: 233 NIFVNKVHVGGC 244 +F+N+ +GGC Sbjct: 71428 QVFINQKFIGGC 71393 >gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig6, whole genome shotgun sequence Length = 254162 Score = 32.0 bits (71), Expect = 1.9 Identities = 23/83 (27%), Positives = 38/83 (45%) Frame = +1 Query: 445 PGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLR 504 P KTLV+GA L G G G +VR+ R +E + +G+ Sbjct: 188674 PSKTLVIGAGVAGLSAIGTAKGLG----SVVRAFDTRAAAKEQVKSMGA----------- 188808 Query: 505 KFIPVMVQQLEKGSPGKLKVLAK 527 +F+ V +++ +G G KV++K Sbjct: 188809 EFLEVHIKESGEGGGGYGKVMSK 188877 >gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold1, whole genome shotgun sequence Length = 1995969 Score = 32.0 bits (71), Expect = 1.9 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -2 Query: 226 TNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262 +N T+P +++ VGG D Y++G L K+L++ Sbjct: 1975739 SNWPTIPQVYIKGEFVGGADIMMNMYKTGELSKMLED 1975629 >gb|GL290989.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold7, whole genome shotgun sequence Length = 428971 Score = 30.8 bits (68), Expect = 4.2 Identities = 25/106 (23%), Positives = 45/106 (42%) Frame = +3 Query: 547 GRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGK 606 G++ T G++ +G + ++S ND +N G +ED L + + + Sbjct: 43494 GKEGGTPVEGIDTVGSTLGQES-----NDEGGSNESVEVTRGSSIED---LIATGVSTKE 43649 Query: 607 LLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKE 652 F CD+ ++PT T EY C S ++ V++KE Sbjct: 43650 WCTDETFEQIDNDCDWSHLPTQE*TDKEYCQCLKSYRDSLGVWQKE 43787 >gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2, whole genome shotgun sequence Length = 3242543 Score = 30.0 bits (66), Expect = 7.2 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +2 Query: 420 PRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFG 468 P YLG GD+ + S+ F+ P P G S+ GF GFG Sbjct: 1496225 PIYLGQFGDRSGVVVSNGKFNYPLAP-----AGFSFAPTTSTGFSFGFG 1496356 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,552,301 Number of Sequences: 42 Number of extensions: 327419 Number of successful extensions: 1288 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 1243 Number of HSP's gapped (non-prelim): 133 length of query: 754 length of database: 10,980,844 effective HSP length: 108 effective length of query: 646 effective length of database: 10,976,308 effective search space: 7090694968 effective search space used: 7090694968 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 65 (29.6 bits)