TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete (754 letters) Database: E.siliculosus/genome.fa 35 sequences; 195,934,119 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genom... 88 1e-16 emb|FN649749.1| Ectocarpus siliculosus strain Ec 32, whole genom... 80 4e-14 emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom... 55 1e-06 emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genom... 45 0.002 emb|FN649733.1| Ectocarpus siliculosus strain Ec 32, whole genom... 42 0.011 emb|FN649750.1| Ectocarpus siliculosus strain Ec 32, whole genom... 39 0.069 emb|FN649736.1| Ectocarpus siliculosus strain Ec 32, whole genom... 37 0.26 emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genom... 37 0.45 emb|FN649737.1| Ectocarpus siliculosus strain Ec 32, whole genom... 36 0.58 emb|FN649732.1| Ectocarpus siliculosus strain Ec 32, whole genom... 36 0.76 emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genom... 35 1.00 emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genom... 35 1.7 emb|FN649752.1| Ectocarpus siliculosus strain Ec 32, whole genom... 34 2.2 emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom... 34 2.9 emb|FN649745.1| Ectocarpus siliculosus strain Ec 32, whole genom... 33 3.8 emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom... 33 4.9 emb|FN649730.1| Ectocarpus siliculosus strain Ec 32, whole genom... 33 6.5 emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genom... 33 6.5 emb|FN649734.1| Ectocarpus siliculosus strain Ec 32, whole genom... 32 8.4 emb|FN649744.1| Ectocarpus siliculosus strain Ec 32, whole genom... 32 8.4 emb|FN649758.1| Ectocarpus siliculosus strain Ec 32, whole genom... 32 8.4 >emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG15 Length = 5788546 Score = 88.2 bits (217), Expect = 1e-16 Identities = 42/62 (67%), Positives = 43/62 (69%) Frame = +3 Query: 266 YDYDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLM 325 YDYD CAKEAA LGKKV LDFV PS G+ WGLGGTCVNVGCIPKKLM Sbjct: 911850 YDYDLVVIGGGSGGLACAKEAARLGKKVACLDFVKPSVMGSKWGLGGTCVNVGCIPKKLM 912029 Query: 326 HQ 327 HQ Sbjct: 912030 HQ 912035 Score = 70.5 bits (171), Expect = 3e-11 Identities = 32/48 (66%), Positives = 39/48 (81%) Frame = +1 Query: 461 AGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIP 508 AGFL G G+D TVMVRSILLRGFDQ +AE++GS+ME G +FLR +P Sbjct: 914500 AGFLTGLGVDTTVMVRSILLRGFDQGIAERIGSFMEAEGTRFLRPAVP 914643 Score = 64.3 bits (155), Expect = 2e-09 Identities = 37/66 (56%), Positives = 43/66 (65%) Frame = +3 Query: 403 QETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAG 462 QE + V+A G RP L +G E +TSDD+F+L PGKTLVVGASYVALECAG Sbjct: 913863 QERVLSCGSVVVAVGGRPNQLPCEGG-ELAMTSDDIFALRTPPGKTLVVGASYVALECAG 914039 Query: 463 FLAGFG 468 AG G Sbjct: 914040 -AAGVG 914054 Score = 50.4 bits (119), Expect = 3e-05 Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Frame = +3 Query: 577 EQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINV----PTTVFTP 632 E+T V V+ +GD +E PELTP A+Q+G+LLA RLFG K N+ T + Sbjct: 916566 EETTVAGVFGIGDAVEGVPELTPSAVQAGRLLAMRLFGGESAKD*SQNMGLCFANTWISG 916745 Query: 633 LEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKII 681 C G++ ++HT PLE T+ N T I+ Sbjct: 916746 SGSVC*GMT-------------SVFHTRQHPLEITLLALNNTTTGGAIL 916853 Score = 45.4 bits (106), Expect = 0.001 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 25/101 (24%) Frame = +2 Query: 307 SWGLGGTCVNVGCIPKKLMH----QAALLGQALCDSRKFGW------------------- 343 S+ L CV C + ++ QAALL D+ FGW Sbjct: 912215 SFALRRVCVADVCTCTQTLNADKNQAALLAGHAKDAPFFGWPAGPEGEDGSRLEEAGGVA 912394 Query: 344 --EYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAY 382 E + V H+WE M + +QN+I LN+ YR LR K V++ Sbjct: 912395 GGEGKRSVTHDWEVMVQGVQNYIKGLNFKYRTDLRSKGVSH 912517 Score = 38.5 bits (88), Expect = 0.12 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = +1 Query: 651 KENLEIYHTLFWPLEWTV-AGRENNTCYAKII 681 +EN+E++H+ F PLEW + + R N CY K+I Sbjct: 917803 EENVEVFHSAFTPLEWQMNSERPQNACYVKVI 917898 Score = 37.7 bits (86), Expect = 0.20 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 702 EVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITK 741 +V QGF ++ G+T L +GIHPT E T L+ TK Sbjct: 920826 KVMQGFGVGIRLGMTMDDLRQLVGIHPTVAEELTLLQTTK 920945 Score = 36.6 bits (83), Expect = 0.45 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +2 Query: 681 ICNKFDHDRVIGFHILGPNAGEVT 704 +C+ D RV+G H LGPNAGEV+ Sbjct: 920429 VCDLTDSQRVVGLHFLGPNAGEVS 920500 >emb|FN649749.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG24 Length = 3847105 Score = 80.1 bits (196), Expect = 4e-14 Identities = 34/43 (79%), Positives = 38/43 (88%) Frame = -2 Query: 291 KKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQ 333 KKV++ DFV PSPQGT WGLGGTCVNVGC+PKKLMH A LLG+ Sbjct: 2944062 KKVVLFDFVKPSPQGTKWGLGGTCVNVGCVPKKLMHYAGLLGE 2943934 Score = 76.3 bits (186), Expect = 5e-13 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 1/64 (1%) Frame = -2 Query: 413 VIATGERPRYLG-IQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDV 471 +IA G RP + G +E+ +TSDDLFSL PGKTLVVGASY+ALECAGF+ GLDV Sbjct: 2941773 IIAVGGRPVIPDDVPGAREHALTSDDLFSLRTSPGKTLVVGASYIALECAGFMRELGLDV 2941594 Query: 472 TVMV 475 TV V Sbjct: 2941593 TVRV 2941582 Score = 50.8 bits (120), Expect = 2e-05 Identities = 23/42 (54%), Positives = 33/42 (78%) Frame = -3 Query: 473 VMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQL 514 V VRSILLRGFDQ++AEK+G M+ GVKF+R +P ++++ Sbjct: 2941058 VAVRSILLRGFDQQVAEKLGDVMKDLGVKFVRPAVPSKIEKV 2940933 Score = 49.3 bits (116), Expect = 7e-05 Identities = 24/74 (32%), Positives = 39/74 (52%) Frame = -1 Query: 307 SWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISS 366 S L T ++ GC+ L + G + D++ FGW+ H+WE M + +QNH+ Sbjct: 2943664 SLALRHTRLSWGCVGDSL---GVITGAGMHDAKAFGWKVGNP-EHDWEAMVETVQNHVKM 2943497 Query: 367 LNWGYRLSLREKAV 380 LN+ YR+ L+ V Sbjct: 2943496 LNFRYRVGLKSAQV 2943455 Score = 47.8 bits (112), Expect = 2e-04 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -2 Query: 689 RVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDI 747 +VIGFH +GPNAGE+TQGF A++ G K + + +H F+ +T LDI Sbjct: 2937261 KVIGFHFVGPNAGEITQGFGLAVRLGAKKSDFNKLVSMHSLPRASFSV--VTLVCALDI 2937091 Score = 43.5 bits (101), Expect = 0.004 Identities = 21/42 (50%), Positives = 28/42 (66%) Frame = -2 Query: 627 TTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTV 668 TT +EYGCCGLSEE AI +Y ++++E Y F LE +V Sbjct: 2939385 TTACWQVEYGCCGLSEEDAIRLYGEDDVETYLFGFGTLEQSV 2939260 Score = 40.4 bits (93), Expect = 0.031 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -3 Query: 518 SPGKLKV-LAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKIN 565 S GKL+V L S G E +G Y++V A GR + T IGLE GVK++ Sbjct: 2940674 SDGKLEVTLVDSKSGEEVSKGTYDSVFYATGRKADTSGIGLETAGVKVS 2940528 Score = 38.9 bits (89), Expect = 0.090 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 10/57 (17%) Frame = -3 Query: 562 VKINEKSGKIPVNDVEQTNVPYVYAVGDILE----------DKPELTPVAIQSGKLL 608 V++N +GKIPV + EQTNV +++A+GD PELTPVA+Q +L Sbjct: 2940134 VQVNP-NGKIPVEN-EQTNVEHIFAIGDCTSVDVMFHESHWANPELTPVAVQVRSML 2939970 Score = 35.8 bits (81), Expect = 0.76 Identities = 16/32 (50%), Positives = 23/32 (71%) Frame = -2 Query: 603 QSGKLLAQRLFGASLEKCDYINVPTTVFTPLE 634 Q+G+LLA RL+ + E+ DY V T VFTP++ Sbjct: 2939787 QAGELLASRLYARATEQMDYSLVATAVFTPVK 2939692 Score = 33.5 bits (75), Expect = 3.8 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = -3 Query: 113 ERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156 E PP PGPG + RR R R+L PGRR R GP Sbjct: 1169351 EPPPPPPPGPGDSVP*GRRRVPRGRYRRLLPHPGRRPRRHGLGP 1169220 >emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, unassigned sequences LGUn Length = 58155991 Score = 55.1 bits (131), Expect = 1e-06 Identities = 25/49 (51%), Positives = 30/49 (61%) Frame = -1 Query: 689 RVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737 +VIG H++G A E+ QGF AMK G TK D + IHPT E F TL Sbjct: 55096306 QVIGLHVIGEGADEMMQGFGVAMKLGATKADFDSCVAIHPTASEEFVTL 55096160 Score = 42.0 bits (97), Expect = 0.011 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 445 PGKTLVVGASYVALECAGFLAGFGLDVTVMV-RSILLRGFDQEMAEKVGSYMEQHGV 500 P K V+GA Y+A+E AG G D T++V R LR FD M + + S M + G+ Sbjct: 55098753 PKKVAVIGAGYIAVELAGVFQSLGTDTTLLVRRDRPLRSFDSLMVDTLMSEMGKSGL 55098583 Score = 34.7 bits (78), Expect = 1.7 Identities = 15/33 (45%), Positives = 22/33 (66%) Frame = -2 Query: 230 TVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262 T+P ++V VGGCD Q +QSG L+ +L+E Sbjct: 38678868 TIPQLYVKGEFVGGCDILTQLHQSGDLETMLKE 38678770 Score = 34.7 bits (78), Expect = 1.7 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +3 Query: 425 IQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVT 472 +Q D + TSD+ L + P +VG+ Y+ LE + G +VT Sbjct: 33017772 VQADGKTVFTSDEALDLAFVPEYAAIVGSGYIGLEFSDVYTALGAEVT 33017915 Score = 34.3 bits (77), Expect = 2.2 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = -2 Query: 101 RPGRARSESETLERSPPQSPG----PGKAGDAPNRRSGHVRGARVLSPPG 146 RP A S S L S PG+AGD +RRSG G SPPG Sbjct: 45682533 RPTVALSSSHPLSSSSSSGAAAHRPPGRAGDPDDRRSGDTAGGGPRSPPG 45682384 Score = 33.5 bits (75), Expect = 3.8 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = -3 Query: 596 ELTPVAIQSGKLLAQRLF-GASLEKCDYINVPTT 628 +LTP+AI +G+ L+ RLF G K DY NVP + Sbjct: 55097345 DLTPMAIAAGRRLSDRLFGGVDGAKADYNNVPVS 55097244 Score = 33.5 bits (75), Expect = 3.8 Identities = 25/87 (28%), Positives = 28/87 (32%) Frame = +2 Query: 53 HARGGVGGRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGRARSESETL 112 H G G PR + R R + + RR RPGR R Sbjct: 3230936 HRHGAASGLAAAPPRAYRRQGRPGRDRAYRRQ---------------GRPGRERGVRRRP 3231070 Query: 113 ERSPPQSPGPGKAGDAPNRRSGHVRGA 139 P PG G G P R GH R A Sbjct: 3231071 PHGRPPLPGGGPHGRHPPARGGHRREA 3231151 Score = 32.7 bits (73), Expect = 6.5 Identities = 22/59 (37%), Positives = 26/59 (44%) Frame = +2 Query: 98 FVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156 FVS PGR R + T P+ P G+ P SG G+R P RR SP P Sbjct: 11039123 FVSSPGR*RWTTSTPPPRTPRPPSRGRTAAGPEIFSGCSAGSRA*RTPARRI---SPPP 11039290 Score = 32.3 bits (72), Expect = 8.4 Identities = 20/53 (37%), Positives = 25/53 (47%) Frame = +1 Query: 103 GRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPG 155 G R+E LER PP P P + D P+ +G V +PPG A L G Sbjct: 28324150 GWQRTECSGLERPPPPPP-PLVSPDTPSGTAGEVAARAAAAPPGDAAVLPMLG 28324305 >emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG01 Length = 3745584 Score = 44.7 bits (104), Expect = 0.002 Identities = 23/54 (42%), Positives = 33/54 (61%) Frame = -1 Query: 679 KIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732 KI+ +K + DR++G HILGPNAGE+ AM+ G + + + T HPT E Sbjct: 2341224 KILSDK-ETDRILGAHILGPNAGEMIAEVVLAMEYGASSEDIARTCHAHPTLSE 2341066 Score = 35.4 bits (80), Expect = 1.00 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -2 Query: 99 VSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154 V PG LE+ PP SP PG+ G + RR G RG L PG++ P Sbjct: 1866362 VGPPGGNPLPPVFLEKGPPCSP-PGRGGPSGKRRPGSPRGKTRLFSPGKKRETHPP 1866198 Score = 33.9 bits (76), Expect = 2.9 Identities = 24/80 (30%), Positives = 29/80 (36%) Frame = -1 Query: 45 GRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGR 104 GRAGDP+ GG GG G RG R A+ G R GR Sbjct: 2620629 GRAGDPVPRHGGGGGGHGGGQGRGQGRRWLQAAGGEAEGGLVEESAGGEQGAR-----GR 2620465 Query: 105 ARSESETLERSPPQSPGPGK 124 E ++ + GPGK Sbjct: 2620464 LHEEERSVSEGDGEEDGPGK 2620405 Score = 32.7 bits (73), Expect = 6.5 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = -1 Query: 310 LGGTCVNVGCIPKKL 324 LGGTC+NVGCIP K+ Sbjct: 2345940 LGGTCLNVGCIPSKV 2345896 >emb|FN649733.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG08 Length = 4529048 Score = 42.0 bits (97), Expect = 0.011 Identities = 15/31 (48%), Positives = 26/31 (83%) Frame = +1 Query: 206 VLELDQVDDGARVQEVLSEITNQKTVPNIFV 236 ++ELD+VD+G+ +Q+ L IT Q++VPN+F+ Sbjct: 1000012 LIELDEVDNGSAIQDALQSITGQRSVPNVFI 1000104 Score = 32.7 bits (73), Expect = 6.5 Identities = 17/57 (29%), Positives = 31/57 (54%) Frame = +1 Query: 173 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQK 229 ++ + VV++SK+YCP T+ K+ +G + V ++ G R Q LS + +K Sbjct: 999469 MVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYEV-RGERNAPGIRYQLSLSPVKTRK 999636 >emb|FN649750.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG25 Length = 4542878 Score = 39.3 bits (90), Expect = 0.069 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = -2 Query: 615 ASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLF 661 A K DY NVPT VF+ CGL+E A Y ++ +++Y + F Sbjct: 4067362 ALFNKADYTNVPTVVFSHPPMATCGLTEPDARAAYGEDAVKVYQSKF 4067222 Score = 38.9 bits (89), Expect = 0.090 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = -3 Query: 311 GGTCVNVGCIPKKLMHQAALLGQ 333 GGTCVNVGC+PKK+M AA + + Sbjct: 4073367 GGTCVNVGCVPKKVMFNAAHINE 4073299 Score = 34.7 bits (78), Expect = 1.7 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -3 Query: 435 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVR 476 SD F + P K VVGA Y+A+E AG G + + +R Sbjct: 4070184 SDGFFDVTEQPKKVAVVGAGYIAVELAGIFDALGTETHLFIR 4070059 Score = 34.7 bits (78), Expect = 1.7 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = -2 Query: 577 EQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLF 613 + T+ VYA+GD+ + ELTP+AI +G+ L+ RLF Sbjct: 4067905 QNTSAEGVYALGDVT-GRVELTPMAIAAGRTLSDRLF 4067798 Score = 33.5 bits (75), Expect = 3.8 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -3 Query: 686 DHDRVIGFHILGPNAGEVTQGFAAAMK 712 + ++V+G HI+G A E+ QGF AMK Sbjct: 4066251 ESEKVVGIHIIGMGADEMMQGFGVAMK 4066171 >emb|FN649736.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG11 Length = 5521395 Score = 37.4 bits (85), Expect = 0.26 Identities = 20/45 (44%), Positives = 23/45 (51%) Frame = -3 Query: 222 LSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAY 266 L + Q TVPN+FV HVGG D A SG L+ LL Y Sbjct: 2721601 LGPSSEQTTVPNVFVKGTHVGGNDAVQAANSSGALKTLLDG*FVY 2721467 Score = 32.3 bits (72), Expect = 8.4 Identities = 11/38 (28%), Positives = 24/38 (63%) Frame = -2 Query: 224 EITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 261 + +N T+P +++ +GG D + +QSG LQ++++ Sbjct: 4131422 DFSNWPTIPQLYLGGEFIGGADIVIELFQSGELQEMIE 4131309 Score = 32.3 bits (72), Expect = 8.4 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = -3 Query: 185 SYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVL 222 S+C TR K LF+ LGV+ V ELDQ+ + + +L Sbjct: 2722729 SFC---TRTKNLFAGLGVDATVYELDQMGESPNPKRLL 2722625 Score = 32.3 bits (72), Expect = 8.4 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +2 Query: 101 RPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154 R GRA + R PP + PG G+AP RG +PP AR+ +P Sbjct: 4442864 RTGRAAPATAPANRKPPAAGLPGARGEAPRAAD---RGGGRTAPPRPLARVPTP 4443016 >emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG17 Length = 5807719 Score = 36.6 bits (83), Expect = 0.45 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = +2 Query: 100 SRPGRARSESETLERSPPQSPGPGKAGDA---PNRRSGHVRGARVLSPPGRR 148 SRPG+ RSE R P Q P P + +A P R ++R R+ P GRR Sbjct: 1614824 SRPGQRRSER---PRGPRQIPSPRRRSEARGLPGARGSYIRALRMAPPGGRR 1614970 Score = 33.5 bits (75), Expect = 3.8 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 95 AFRFVSRPGRARSESETLERSPPQSPGPGKAGDA-PNRRSGHVRGARVLSPPGRRARLS 152 A R+ P R R+ S R PP P PG G A RR+G RG R P RR R S Sbjct: 2084128 ARRWPGHPKRGRTRSP---RPPPPRPPPGSGGLAGRRRRAGQGRGTR----PARRCRRS 2084283 Score = 32.7 bits (73), Expect = 6.5 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Frame = -3 Query: 100 SRPGRARSESETLERSPPQSPGPGKAGDAPNRRS-GHVRGARVLSPPGR-----RARLSS 153 SRP +R L R PP+ P A P RRS G +RG P GR RA +S Sbjct: 4454354 SRPANSRRSRSALRRGPPRPP----AHPHPRRRSQGLLRGWTSRGPSGR*G*PSRAPAAS 4454187 Query: 154 PGP 156 GP Sbjct: 4454186 RGP 4454178 >emb|FN649737.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG12 Length = 3842133 Score = 36.2 bits (82), Expect = 0.58 Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 114 RSPPQSPGPGKAGDAPNRRSGHVRGARV-LSPPGRRARLSSPGP 156 RSP Q P A AP R SG R ARV L GR+ ++S GP Sbjct: 429063 RSPAQPAAPADAAPAPPRSSGGYRAARVGLDSSGRKLKVSLCGP 429194 >emb|FN649732.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG07 Length = 2353607 Score = 35.8 bits (81), Expect = 0.76 Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +3 Query: 99 VSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSG-HVRGARV 141 VS PGR S LE+ + G GK GDA R G H RGARV Sbjct: 18330 VSSPGRRSSGESFLEQEEEEGQGGGKGGDA*CGRVGDHPRGARV 18461 Score = 32.3 bits (72), Expect = 8.4 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -1 Query: 97 RFVSRPGRARSESETLERSPPQSPG-PGKAGDAPNRRSGHVRGARVLSPPGRRA 149 R S PGR R S TL RSPP+S P + P RRSG R + RRA Sbjct: 2058827 RTSSSPGRTRGPS-TLPRSPPRSSRRPLRCTWTPARRSGRSRASSKAGAGTRRA 2058669 >emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG31 Length = 577967 Score = 35.4 bits (80), Expect = 1.00 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -3 Query: 99 VSRPGRARSESETL-ERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150 +S GR + + TL +RSPP G G+AG +RR SPPGRR R Sbjct: 567222 ISSAGRIEARTRTLHQRSPPPVLGDGRAGGRCSRR----------SPPGRRVR 567094 >emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG23 Length = 3983565 Score = 34.7 bits (78), Expect = 1.7 Identities = 12/15 (80%), Positives = 15/15 (100%) Frame = -3 Query: 310 LGGTCVNVGCIPKKL 324 +GGTCVNVGC+PKK+ Sbjct: 2475604 MGGTCVNVGCVPKKV 2475560 >emb|FN649752.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG27 Length = 4309624 Score = 34.3 bits (77), Expect = 2.2 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = +2 Query: 207 LELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCD 245 +ELD+ DG ++ LS+ T + +VP I++ VGGC+ Sbjct: 2404157 VELDERQDGNAIRYELSQKTGRTSVPQIWIGGEFVGGCN 2404273 Score = 33.5 bits (75), Expect = 3.8 Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = +1 Query: 6 RLVSGKRRMHLTSRPVASTHSPLILD---MCPHLNNGPMTGCGRAGDPISHARGGVGGRG 62 R V +RR L +RP TH PL L + G AG P H GGVGG G Sbjct: 131296 RRVRQRRRQGLQARP---THFPLALPGGAAALEVGGQGRRGTTTAGPPADH-EGGVGGGG 131463 Query: 63 ERLP 66 ER P Sbjct: 131464 ERDP 131475 >emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG02 Length = 9289656 Score = 33.9 bits (76), Expect = 2.9 Identities = 23/55 (41%), Positives = 28/55 (50%) Frame = -3 Query: 102 PGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156 PGR R + ++ R+P SPG G A AP+ R G S GR AR S P P Sbjct: 608515 PGRPRPTAGSVPRTPAASPG-GMATAAPSPRRGR-------SCAGRSARPSRPAP 608375 Score = 33.1 bits (74), Expect = 4.9 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Frame = +3 Query: 107 SESETLERSPPQ----SPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156 SE + R+PP+ S P P++R R A LSPPGR R P P Sbjct: 879219 SEDSSCSRAPPRTTESSAAPALGHSGPSQRRKRTRRAAGLSPPGRCRRHCCP*P 879380 Score = 32.3 bits (72), Expect = 8.4 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = -2 Query: 102 PGRARSESETLERSPPQSPGPGKAGDAPNRRS-GHVRGARV-LSPPGRRARLSSP 154 P R R + SP +PGP AG +R G V G R +P GR++ +SP Sbjct: 6532121 PWRGRRDRRARRASPSAAPGPAPAGPGASRPGEGGVFGGRCSCAPGGRKSSRTSP 6531957 Score = 32.3 bits (72), Expect = 8.4 Identities = 20/45 (44%), Positives = 24/45 (53%) Frame = -2 Query: 106 RSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150 RS+ + RSP Q+P PG P+RR H G RV PP R R Sbjct: 455834 RSQGKVYNRSPEQAPDPGP--HLPSRREPHSDG-RVHPPPERVKR 455709 >emb|FN649745.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG20 Length = 1840930 Score = 33.5 bits (75), Expect = 3.8 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +3 Query: 38 NGPMTGCGRAGDPISHARGG-VGGRGERLPRGFARVVR 74 NG GC +AG H RGG GR R PRG R+ R Sbjct: 258564 NGNGGGCRQAGGRHQHHRGGRAAGRRRRAPRGIPRLAR 258677 >emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG03 Length = 7313625 Score = 33.1 bits (74), Expect = 4.9 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = -3 Query: 95 AFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154 +F F S P S + LE + SP P + P RS VRG RV GRR L Sbjct: 3459502 SFPFKSYPRSRSSATTLLELALEASPYPKIRRNPPPSRSDSVRGRRVSIATGRRRTLRRS 3459323 Query: 155 G 155 G Sbjct: 3459322 G 3459320 >emb|FN649730.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG05 Length = 2246853 Score = 32.7 bits (73), Expect = 6.5 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -1 Query: 117 PQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRAR 150 PQ+P PGKA + + +G + RVL P RAR Sbjct: 787542 PQTPSPGKASPSSSFLAGTIPRGRVLEDPASRAR 787441 >emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG26 Length = 7107661 Score = 32.7 bits (73), Expect = 6.5 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Frame = +2 Query: 5 HRLVSGKRRMH-----LTSRPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVG 59 +R+ S K+R H +T+ P A PL L + ++ +HA Sbjct: 6938312 YRICSTKKRTHWWGSAVTTPPTARARLPLTLRLSERHDS-------------AHATSKTW 6938452 Query: 60 GRGERLPRGFARVVRVASEGSVR 82 G G + RGF RVASE S R Sbjct: 6938453 GNGALIRRGFGDTARVASEFSTR 6938521 Score = 32.3 bits (72), Expect = 8.4 Identities = 20/62 (32%), Positives = 26/62 (41%) Frame = +2 Query: 268 YDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQ 327 YD CA E+A GK V ++D S LGG CV+ G IP K + Sbjct: 5686106 YDLVIVGSGPAAQKCAIESAKYGKSVCIVD--------KSSQLGGVCVHTGTIPSKTFRR 5686261 Query: 328 AA 329 + Sbjct: 5686262 VS 5686267 >emb|FN649734.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG09 Length = 6071967 Score = 32.3 bits (72), Expect = 8.4 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%) Frame = +1 Query: 211 QVDDGARVQEVLSEIT-NQKTVPNIFVNKVHVGGCD 245 Q + A +++ ++ + N+ +VP I++N+ HVGGCD Sbjct: 765688 QEPNTAEIRKAMTALAANRTSVPQIWINQKHVGGCD 765795 >emb|FN649744.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG19 Length = 3025835 Score = 32.3 bits (72), Expect = 8.4 Identities = 20/51 (39%), Positives = 23/51 (45%) Frame = -1 Query: 104 RARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154 R R+ S + RSPP PGP P RS R R PP AR + P Sbjct: 2603297 RKRTNSRSNRRSPPACPGP------PRTRSPKARRPRRRDPPSS*ARPACP 2603163 >emb|FN649758.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG33 Length = 4484617 Score = 32.3 bits (72), Expect = 8.4 Identities = 12/39 (30%), Positives = 25/39 (64%) Frame = +3 Query: 224 EITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262 E ++ T+P ++++ GG D +++QSG L+K L++ Sbjct: 3805110 EFSSWPTIPQLYIDGEFTGGADIMIESFQSGELKKTLED 3805226 Database: E.siliculosus/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 195,934,119 Number of sequences in database: 35 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,540,468 Number of Sequences: 35 Number of extensions: 3487734 Number of successful extensions: 25947 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 18539 Number of HSP's gapped (non-prelim): 15731 length of query: 754 length of database: 65,311,373 effective HSP length: 121 effective length of query: 633 effective length of database: 65,307,138 effective search space: 41339418354 effective search space used: 41339418354 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 71 (32.0 bits)