TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete (754 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 466 e-141 supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 122 9e-28 supercontig_1.14 of Capsaspora owczarzaki ATCC 30864 94 3e-19 supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 34 0.42 supercontig_1.15 of Capsaspora owczarzaki ATCC 30864 32 2.1 supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 32 2.1 supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 31 2.7 supercontig_1.73 of Capsaspora owczarzaki ATCC 30864 30 4.7 supercontig_1.21 of Capsaspora owczarzaki ATCC 30864 30 6.1 supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 30 6.1 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 466 bits (1200), Expect(2) = e-141 Identities = 250/532 (46%), Positives = 325/532 (61%), Gaps = 103/532 (19%) Frame = +3 Query: 284 KEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQA--------- 334 K AA LGK+V VLDFV PSPQG++WGLGGTCVNVGCIPKKLMHQA LLG+A Sbjct: 1734597 K*AAKLGKRVCVLDFVKPSPQGSTWGLGGTCVNVGCIPKKLMHQACLLGEAIEVTKKARK 1734776 Query: 335 -------------------------------------------LCDSRKFGWEYNQ-QVR 350 L D+ KFGWE + ++ Sbjct: 1734777 GQPREAQARAHQTSIEVF*LEHAKTTQTP*LRKPLF*TLV*LAL*DAEKFGWEVEKANIK 1734956 Query: 351 HNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAA 410 H+W + + +HI LN+ YR+SLRE V Y+N+YG F + H I+ T+KK + T TA Sbjct: 1734957 HDWSKLVMGVSDHIGGLNFAYRVSLRENNVTYLNAYGVFKDAHTIECTDKKRKVTTLTAE 1735136 Query: 411 QFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLD 470 FV+A G RP+Y I G +E ITSDD+FSLPY PGKTLVVGASYVALECAGFL G G D Sbjct: 1735137 HFVLAVGGRPKYPDIPGARELGITSDDMFSLPYAPGKTLVVGASYVALECAGFLTGLGYD 1735316 Query: 471 VTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLE---KGSPGKLKVLAK 527 TVM RSI LRGFDQ+ AE++ +YM +HG KFLR+ +P+ ++++E + G+ ++ Sbjct: 1735317 TTVMARSIFLRGFDQQCAEQIAAYMSEHGTKFLRRCVPLSLERIEPEADSATGRHRIRVT 1735496 Query: 528 STEGTETIEG--VYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVY 585 +G G V++TVL AIGR++ T IGLE +G+K N SGK+ +EQT+VP V+ Sbjct: 1735497 WEDGLANEPGSDVFDTVLFAIGREAVTSTIGLEALGLKAN-ASGKVDA-PLEQTSVPNVF 1735670 Query: 586 AVGDILEDKPELTPVAIQ------------------------------------------ 603 A+GD++ +PELTPVAIQ Sbjct: 1735671 AIGDVINGRPELTPVAIQVRVWSSSFAREGLLHSGLCCRGLIPSLPLPRLLPIIIIFSHD 1735850 Query: 604 ---SGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTL 660 +G+LLA+RL+G + + DY N+PTTVFTPLEYGC G++EE AI +YK+EN+E++H Sbjct: 1735851 DA*AGRLLAKRLYGGATTQMDYANIPTTVFTPLEYGCIGMAEEDAIALYKEENIEVFHQY 1736030 Query: 661 FWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMK 712 F PLEWTVA R +TCY K+ICNK D+ RVIG HILGPNAGE+TQG+ A + Sbjct: 1736031 FQPLEWTVAHRPASTCYCKLICNKLDNMRVIGLHILGPNAGEITQGYGVAFR 1736186 Score = 153 bits (387), Expect = 4e-37 Identities = 115/339 (33%), Positives = 168/339 (49%), Gaps = 34/339 (10%) Frame = -2 Query: 433 ITSDDLFSLPYCPGKTLVVGASYV--------------------------------ALEC 460 ITSD F L P K VVGA YV A+E Sbjct: 397769 ITSDGFFELNEQPKKVAVVGAGYVPVFFFGGGLHYLKFEQSVRTDIQMRHT*SRYIAVEL 397590 Query: 461 AGFLAGFGLDVTVMVRSI-LLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSP 519 AG G +V+++VR +LR FD + + V + GV L + V + K Sbjct: 397589 AGIFRALGSEVSLLVRHDGVLRKFDSMLHKGVEEELTASGVNLL---LNTHVSSVTKDDS 397419 Query: 520 GKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQT 579 G L + T GT + ++ ++ AIGR + LEK GV + +K G I V++ + T Sbjct: 397418 GHLSLAL--TNGTT--QSGFDCLVWAIGRSPTIEDLDLEKTGVSL-DKDGLIKVDEFQNT 397254 Query: 580 NVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLE-KCDYINVPTTVFTPLEYGCC 638 ++AVGD+ +LTPVAI +G+ L++RLF + K +Y N+ + VF+ G Sbjct: 397253 THEGIHAVGDVASHW-QLTPVAIAAGRRLSERLFAGKTDLKLEYENIASVVFSHPALGTV 397077 Query: 639 GLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGP 698 GLSEE AI + K+NL+IY F + ++ R+ T K++C + ++VIG H++G Sbjct: 397076 GLSEEDAIAKHGKDNLKIYSATFTNMYHSMTTRKTKT-RVKLVCLGKE-EKVIGVHVIGI 396903 Query: 699 NAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737 A E+ QGFA A+K G TK DDT+ IHPT E TL Sbjct: 396902 GADEMIQGFAVAVKMGATKAQFDDTVAIHPTASEELVTL 396786 Score = 55.8 bits (133), Expect(2) = e-141 Identities = 26/41 (63%), Positives = 30/41 (73%) Frame = +2 Query: 714 GLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCUG 754 G TK D T+GIHPTC E FTTL+IT++SGLD KGC G Sbjct: 1736276 GATKDDFDMTVGIHPTCSENFTTLDITRASGLDPGAKGC*G 1736398 Score = 37.4 bits (85), Expect = 0.038 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = -1 Query: 226 TNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262 +N T+P +F+N VGGCD +QSG L+ +L++ Sbjct: 1255629 SNWPTIPQVFINGEFVGGCDILLNLHQSGELETMLKK 1255519 Score = 35.4 bits (80), Expect = 0.15 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = -2 Query: 315 VNVGCIPKKLMHQAALLGQALCDSRKFGWE 344 VNVGC+PKK+M A + +AL D+ +G++ Sbjct: 398453 VNVGCVPKKVMWNTASMAEALHDAPDYGFD 398364 Score = 33.5 bits (75), Expect = 0.55 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = -1 Query: 98 FVSRPGRARSESETLERSPPQSPGPGKAGDAPNR-RSGHVRGARVLSPPGRRARLSSPGP 156 +++R ++ S S P SP P + GD P R R R R +PP RR SSP P Sbjct: 155277 WITRHCCRKAPSRRTSESAPTSPIPRRRGDCPVRPRLLRPRLLRPPAPPARRRAPSSPSP 155098 Score = 29.6 bits (65), Expect = 8.0 Identities = 21/74 (28%), Positives = 33/74 (44%) Frame = +2 Query: 332 GQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVE 391 G A+ SR+FG + H T + +Q+ WG+ +SL+ K G V Sbjct: 799559 GHAIPQSREFGSDDVVANGHRLATESGHLQDGTKQRGWGWEVSLQRK-----GGGGRLV- 799720 Query: 392 HHKIKATNKKGQET 405 ++ TNKK + T Sbjct: 799721 ---VEVTNKKNKST 799753 >supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 Length = 955311 Score = 122 bits (306), Expect = 9e-28 Identities = 99/359 (27%), Positives = 177/359 (49%), Gaps = 7/359 (1%) Frame = -1 Query: 347 QQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETY 406 + V+ + + A ++ L G + L++ V YV +G+ ++ G Sbjct: 534756 ENVKLDLPKLMAAKDKAVTGLTGGVEMLLKKNKVDYVKGHGKITGAQEVTVDLLGGGSQV 534577 Query: 407 YTAAQFVIATG-ERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLA 465 A + +IATG E + GI D++ ++S +L P K +V+G + LE + Sbjct: 534576 LKAKRILIATGSEVTPFPGIAIDEQTIVSSTGALALKAVPKKMIVIGGGVIGLELGSVWS 534397 Query: 466 GFGLDVTVM--VRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLK 523 G +VTV+ + I G D E+A+ + + G+ F + V K + G +K Sbjct: 534396 RLGAEVTVVEFLGGIGGAGIDGEVAKNFQRVLTKQGLNFK---LNTKVTGATKQANGSVK 534226 Query: 524 VLAKSTEGT--ETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNV 581 V +S +G+ ET++ + +L+AIGR T +GL++ GVK++ + G++ VN++ TNV Sbjct: 534225 VNVESADGSVKETLDA--DVLLVAIGRRPYTNNLGLKEAGVKVDNR-GRVEVNNMFTTNV 534055 Query: 582 PYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLS 641 P +YA+GD+++ P L A G L + + G DY NVP+ ++T E G + Sbjct: 534054 PSIYAIGDVIQG-PMLAHKAEDEGILAVEGMCGGH-PHIDYNNVPSVIYTHPEVAWVGKT 533881 Query: 642 EEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTC--YAKIICNKFDHDRVIGFHILGP 698 EE+ K + +E Y +P + NN + K++ +K D+++G HI+GP Sbjct: 533880 EEQ----LKADGVE-YTIGKFPFVANSRAKTNNDTDGFVKVLGDK-KTDQILGAHIIGP 533722 Score = 32.7 bits (73), Expect = 0.94 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -3 Query: 310 LGGTCVNVGCIPKKLM 325 LGGTC+NVGCIP K + Sbjct: 534988 LGGTCLNVGCIPSKAL 534941 Score = 30.0 bits (66), Expect = 6.1 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 8/63 (12%) Frame = -2 Query: 100 SRPGRARSESETLERSPPQSPGPGKAGDAPNRR--------SGHVRGARVLSPPGRRARL 151 +RP R+RS R PP+ P RR SG R R L PP R Sbjct: 387851 ARPPRSRSTPRFPTRCPPRLSSASARATCPARRCRLFLMDSSGATRSWRTLIPPRARGPC 387672 Query: 152 SSP 154 SP Sbjct: 387671 RSP 387663 >supercontig_1.14 of Capsaspora owczarzaki ATCC 30864 Length = 919646 Score = 94.4 bits (233), Expect = 3e-19 Identities = 45/87 (51%), Positives = 58/87 (66%) Frame = +2 Query: 174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPN 233 + + V IFSKSYCP+ RVK LF S+GV+ +ELD DG+ +Q L +T Q+TVPN Sbjct: 583547 VASNTVAIFSKSYCPYCKRVKALFDSIGVKYTAIELDTHPDGSGIQSELINVTGQRTVPN 583726 Query: 234 IFVNKVHVGGCDQTFQAYQSGLLQKLL 260 +FV H+GG D T A +SG LQKLL Sbjct: 583727 VFVRGTHIGGSDDTHAAQKSGRLQKLL 583807 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 564 INEKSGKIPVNDVEQTNVPYVYAVGDI 590 + G I VND QTN+P V+A GD+ Sbjct: 537869 LRASDGGIAVNDQMQTNLPDVFAAGDV 537789 >supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 Length = 3794667 Score = 33.9 bits (76), Expect = 0.42 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = -3 Query: 104 RARSESETLERSPPQSPGPGKAGDAPNRRSGHVR------GARVLSPPGRRARLSSPGP 156 R R +S + ER PPQ + P RR+ H A LSPP RRAR SP P Sbjct: 551578 RVRHDSPSPERRPPQ-----RDLSPPRRRARHDSPSPDRAAAADLSPPRRRARHDSPSP 551417 Score = 30.0 bits (66), Expect = 6.1 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = +2 Query: 99 VSRPGRARSESETLERSPP---QSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP 154 VSRP S T RS P Q P P APN R + + SPP R LSSP Sbjct: 3571298 VSRPSTC--PSRTWPRSLPP*LQRPRPSSRSLAPNPRRWTTLPSALPSPPSRPT*LSSP 3571468 >supercontig_1.15 of Capsaspora owczarzaki ATCC 30864 Length = 930169 Score = 31.6 bits (70), Expect = 2.1 Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 15/234 (6%) Frame = +2 Query: 515 EKGSPGKLKVLAKSTEGTETIEGVYNT---VLLAIGRDSCTRKIGLEKIGVKINEKSGKI 571 EK K K++AK+ + + + ++LA ++ +R+ GL + V N +G++ Sbjct: 790826 EKRKKKKKKLIAKTRRQLDNNKQKLDDLRKIVLATSKNLNSRR-GLGAVNVARNA-AGRL 790999 Query: 572 PVNDVEQTNVPYVY-AVGDI--LEDKPELTPVAIQSGKLLAQR---LFGASLEKC----- 620 VND + V+ A GD+ L D+P +GK+ A+ L LE+ Sbjct: 791000 VVNDGRHERLEVVWLAHGDLASLFDEPGENGRCEAAGKVDARARRALLALVLERRADGAV 791179 Query: 621 -DYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAK 679 D ++V V +E L++E + + E + L PLE A E N + Sbjct: 791180 DDRLDVRGGV-NQVEVFASSLADETGVGLVVGE--VVADLLPDPLEGGGAASEGNGGEVR 791350 Query: 680 IICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 733 ++C+K R +G H + A + L + L+D+ +G H G + Sbjct: 791351 VLCHKLAKGRTVGGHKVD----------NAIRQTSLAQNLVDNPVGKHGGVGRL 791482 >supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 Length = 1512001 Score = 31.6 bits (70), Expect = 2.1 Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 5/111 (4%) Frame = -3 Query: 104 RARSESETLERSPPQSPGPGKA----GDAPNRRSGHVRGARVLSPPGRR-ARLSSPGPXX 158 RARS +RSP Q+ P A G A R + R L P R+ AR + PGP Sbjct: 1357556 RARSSPTFAQRSPSQTASPRTAPSISGSAVLRALLAILATRFLMPLARQLARRARPGP-- 1357383 Query: 159 XXXXXXXXXXHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLEL 209 L G + + S+ H TR L +L +LE+ Sbjct: 1357382 --TRHPPAQPRLAGALRLQSTRPTAMSFARHLTRFLRLARTLATTDMILEV 1357236 >supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 Length = 2141673 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = -3 Query: 104 RARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPG 155 R+RS S + RS +SP P ++ RS PGRR R +SPG Sbjct: 228982 RSRSRSPSRNRSRSRSPSPSRSRSRSRSRS-----------PGRRHRSNSPG 228860 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/52 (34%), Positives = 26/52 (50%) Frame = -3 Query: 365 SSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIAT 416 SSL W SL+ ++S G+ ++HK K T K + T A+FV T Sbjct: 69334 SSLIWSSLTSLKSHITVELSSSGKRRKNHKSKITKTKASQPAATQAKFVKET 69179 >supercontig_1.73 of Capsaspora owczarzaki ATCC 30864 Length = 6594 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = +1 Query: 113 ERSPPQSPGPGKAGDAPNRRSGHV---RGARVLSPPGRRAR 150 ER PP +P P P+R S V R A SP GRR R Sbjct: 1702 ERRPPTAPPPSSQSTQPSRPSRRVASNRSACSRSPSGRRRR 1824 >supercontig_1.21 of Capsaspora owczarzaki ATCC 30864 Length = 26478 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -3 Query: 113 ERSPPQSPGPGKAGDAPNRRSGHV---RGARVLSPPGRRAR 150 ER PP +P P P+R S V R A SP GRR R Sbjct: 24832 ERRPPTAPPPSSQSRLPSRPSRRVASNRSACSRSPSGRRRR 24710 >supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 Length = 1292811 Score = 30.0 bits (66), Expect = 6.1 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = +2 Query: 95 AFRFVSRPGRARSESETLERSPP-----QSPGPGKAGDAPNRRSGHVRGARVLSPPGRRA 149 A F +RPGR S + SP QS ++ A R G R + ++PP +R Sbjct: 727511 ALPFANRPGRHVSANSDNMSSPAAPHAQQSSSSQRSFPAAGVRDGRRRMQQPIAPPSKRG 727690 Query: 150 RLSSP 154 SSP Sbjct: 727691 LASSP 727705 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,300,209 Number of Sequences: 89 Number of extensions: 428801 Number of successful extensions: 2866 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 2234 Number of HSP's gapped (non-prelim): 1431 length of query: 754 length of database: 9,347,932 effective HSP length: 107 effective length of query: 647 effective length of database: 9,338,409 effective search space: 6041950623 effective search space used: 6041950623 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 64 (29.3 bits)