TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete (754 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl... 223 3e-58 dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 149 5e-36 dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp... 133 2e-31 dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp... 92 8e-19 dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 80 4e-15 dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, compl... 77 3e-14 dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, compl... 31 2.1 >dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete sequence Length = 481791 Score = 223 bits (567), Expect = 3e-58 Identities = 156/492 (31%), Positives = 239/492 (48%), Gaps = 8/492 (1%) Frame = -1 Query: 261 QEDLAYDYDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCI 320 Q D ++D+D A+ +A G +V + + S LGGTCVNVGCI Sbjct: 106428 QPDTSFDFDLFVIGGGSGGVRAARVSANHGARVALAE---------SSRLGGTCVNVGCI 106276 Query: 321 PKKLMHQAALLGQALCDSRKFGWEYNQQVRHN---WETMTKAIQNHISSLNWGYRLSLRE 377 PKKL + D+R +GW+ + + WE + I LN Y+ L + Sbjct: 106275 PKKLFSYGSHYLHEFEDARAYGWDLPTKSELDPVDWERLIHNKDAEIERLNGVYQRILEK 106096 Query: 378 KAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDD 437 V + EFV+ HKI+ + + ++A ++A G R + CI SDD Sbjct: 106095 ANVRIFHERAEFVDAHKIRLASGET----FSAKYILVAVGGRSNLIADLPGAALCIHSDD 105928 Query: 438 LFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRS-ILLRGFDQEMAEKVGSYME 496 F L + P LV+G Y+ E A G+G VT + R + LRGFD ++ + M Sbjct: 105927 CFYLKHLPRSILVLGGGYIGTEFACIFHGYGSKVTQVHRGKLFLRGFDDDVRHFLAEQMR 105748 Query: 497 QHGVKFLRKFIPVMVQQLEKGSPGKLKVL-AKSTEGTETIEGVYNTVLLAIGRDSCTRKI 555 + G+ V+ + S + +VL A T+G+ I + VLLA+GR T + Sbjct: 105747 KDGIDLRFGCNLKAVEAIPDASAPEGRVLKAHLTDGSTLI---VDQVLLAVGRHPNTEGL 105577 Query: 556 GLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGA 615 GLE+ G+K ++ G I V++ +TNV +YAVGD+ ++ LTPVAI G A +FG Sbjct: 105576 GLERAGIKTDQHRGHILVDEYSRTNVETIYAVGDV-TNRMNLTPVAIAEGHCFADTVFGG 105400 Query: 616 SLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKE---NLEIYHTLFWPLEWTVAGRE 672 Y VPT VF+ G GL+E +A E+ ++ ++IY ++F PL+ T+ R+ Sbjct: 105399 KARAPGYDMVPTAVFSVPPIGMVGLTEARARELDAEQGGTGIDIYRSMFRPLKHTLTKRD 105220 Query: 673 NNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732 T ++ + RV+G H++ A E+ Q A A+K G TK D+ IG+HPT E Sbjct: 105219 RQTLMKLVVDRR--TQRVLGCHLVDDAAPEIIQSVAIALKMGATKADFDNVIGVHPTSAE 105046 Query: 733 VFTTLEITKSSG 744 T+ S G Sbjct: 105045 ELVTMREKVSDG 105010 Score = 28.9 bits (63), Expect = 8.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -3 Query: 100 SRPGRARSESETLERSPPQSPGPGKAGDAPNRR 132 + PGR RSE + + RS GP K +P R Sbjct: 374497 AEPGRTRSEIQNVSRSSSYLTGPEKRASSPQLR 374399 >dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete sequence Length = 866983 Score = 149 bits (375), Expect = 5e-36 Identities = 124/437 (28%), Positives = 203/437 (46%), Gaps = 14/437 (3%) Frame = +3 Query: 310 LGGTCVNVGCIPKK-LMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLN 368 LGGTC+NVGCIP K L+H + L +A G +V M K N + L Sbjct: 757422 LGGTCLNVGCIPSKALLHSSHLYEEAKHAFPTHGIRIEGKVTLELPAMMKQKMNSVRGLT 757601 Query: 369 WGYRLSLREKAVAYVNSYGEFVEHHKIKA----TNKKGQETYYTAAQFVIATGERPRYLG 424 G ++ V YV G+ +IK +++ QE + A +IATG P L Sbjct: 757602 KGIEALFKKNQVTYVKGTGKLASATQIKVRPPDSDEFAQEIH--AKNIIIATGSEPVALP 757775 Query: 425 -IQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVM-VRSILLRG 482 + D++ ++S SLP P + V+G Y+ LE G +VTV+ ++ Sbjct: 757776 MLPFDEKRVVSSTGALSLPTIPQRMAVIGGGYIGLEMGSVWRRLGAEVTVIEFTDRIVPA 757955 Query: 483 FDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKV-LAKSTEGTETIEGVYNT 541 D E+ ++ +++ G+KF + + SP L++ AK + ET + + Sbjct: 757956 MDHEIGDRFLQILKKQGLKFKLGTKVTGAKIPAEPSPVTLELESAKDSSKKETFDA--DV 758129 Query: 542 VLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVA 601 VL+A GR T ++GLE +G++++++ G+IP++D +T VP +YA+GD++ L A Sbjct: 758130 VLVATGRRPYTAELGLEALGIELDDR-GRIPIDDAFRTRVPNIYAIGDVVRGAM-LAHKA 758303 Query: 602 IQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLF 661 G A+ + G +Y +P V+T E G +EE+ K Y+ Sbjct: 758304 EDEGIACAETIAGHKAH-LNYDCIPGVVYTHPEVASVGKTEEEL-----KAAGIAYNKGT 758465 Query: 662 WPLEWTVAGRENNTC------YAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGL 715 +P R N+ K++ K DR++G HI+GP AGE+ AM+ G Sbjct: 758466 FPFMANSRARTNDAGGDFTQGLVKVLAEK-QTDRILGLHIIGPGAGEMIAEGVLAMEYGA 758642 Query: 716 TKQLLDDTIGIHPTCGE 732 + + + T HPT E Sbjct: 758643 SSEDIARTCHAHPTLSE 758693 Score = 33.1 bits (74), Expect = 0.43 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Frame = -1 Query: 177 SRVVIFSKS-----YCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTV 231 S+VV++ K C S + + ++GV + V ++E + + + T+ Sbjct: 627655 SKVVLYMKGEPEAPLCGFSYKAVSILKAMGVP---FQSYNVLADPLLREAIKKYSQWPTI 627485 Query: 232 PNIFVNKVHVGGCDQTFQAYQSGLLQKLL 260 P +FV+ +GG D Y+SG L+++L Sbjct: 627484 PQLFVDGEFIGGSDIMESMYRSGELKQIL 627398 >dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete sequence Length = 1232258 Score = 133 bits (335), Expect = 2e-31 Identities = 136/490 (27%), Positives = 216/490 (44%), Gaps = 22/490 (4%) Frame = -2 Query: 266 YDYDXXXXXXXXXXXXCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLM 325 YDYD A A G K VL T GGTCVN GC+P K + Sbjct: 590743 YDYDLVIIGAGVGGHGAALHARSRGLKTAVL---------TGGDAGGTCVNRGCVPSKAL 590591 Query: 326 HQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYR----LSLREKAVA 381 AA + L + VR + +A+ NH +SL R SLR V Sbjct: 590590 LAAAGKVRELRTVERLQ-AMGISVRGQVDYDRQAVSNHANSLASRVRGNLVQSLRGLGVD 590414 Query: 382 YVNSYGEFVEHHKIKATNKKGQ--ETYYTAAQFVIATGERPRYL-GIQGDKEYCITSDDL 438 +++ G V K++ + + E TA VIATG P GIQ D + TSDD Sbjct: 590413 VLDARGALVAPQKVELLKPRERTGERVVTARDVVIATGSVPAVPPGIQVDGKTVFTSDDA 590234 Query: 439 FSLPYCPGKTLVVGASYVALECAGFLAGFGLDVT-VMVRSILLRGFDQEMAEKVGSYMEQ 497 L + P ++G+ Y+ LE + G +VT + L+ FD E + Y E+ Sbjct: 590233 LKLEWVPEWIAIIGSGYIGLEFSDVYTALGSEVTFIEAAPKLMPSFDAE----ISRYAER 590066 Query: 498 HGV--KFLRKFIPVMVQQLEKGSPGKLK-----VLAKSTEGTETIEGVYNTVLLAIGRDS 550 + + + + V+ ++ G PG+ V A++ E ++ + L+A GR Sbjct: 590065 LLISPRPVDAYTGVLATKVVPGIPGQKPVHIELVNAETKAPVEVLQ--VDAALVATGRRP 589892 Query: 551 CTRKIGLEKIGVKINEKSGKIPVND----VEQTNVP--YVYAVGDILEDKPELTPVAIQS 604 T +GLEK+GV++N+ G +PV+D +++T P ++Y +GD K L A Sbjct: 589891 YTDGLGLEKLGVRLNK--GFVPVDDHMRVLDETGAPIEHLYCIGD-ANGKLMLAHAASAQ 589721 Query: 605 GKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPL 664 G + + + G + + +P FT E G +EE+A + ++E E+ L Sbjct: 589720 GISVVEHIAGNTSYRLRMECIPAACFTHPEISMVGFTEEQARAIAERERFELGKALGHFR 589541 Query: 665 EWTVAGRENNT-CYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDT 723 + A EN+ AK++ K D ++G HI+G +A ++ A AM+ G+ L Sbjct: 589540 ANSKALAENHAEGIAKVLFRK-DTGELLGMHIIGMHAADLIHEAANAMQTGIPVHKLAFA 589364 Query: 724 IGIHPTCGEV 733 + HPT E+ Sbjct: 589363 VHTHPTLSEI 589334 >dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete sequence Length = 839707 Score = 92.0 bits (227), Expect = 8e-19 Identities = 118/456 (25%), Positives = 189/456 (41%), Gaps = 13/456 (2%) Frame = +2 Query: 310 LGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKA--IQNHISSL 367 +GGTCVNVGCIP K + + L + C+ K N M A ++ +L Sbjct: 47162 IGGTCVNVGCIPSKHLVRCGQL-EHWCELHKHQTVSNAVNGCPCPGMLDAPKLRTARQAL 47338 Query: 368 NWGYRLSLREKAVA----YVNSYGEFVEHHK----IKATNKKGQ--ETYYTAAQFVIATG 417 R E+ + +GE H ++ T G +T + +IA G Sbjct: 47339 VEQLRYQKYERVLGENPRITTWHGEARFHDPQSVWVRTTADDGSRVDTLLRFDRCLIAVG 47518 Query: 418 ERPRYLGIQGDKEYCI-TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVR 476 P I G E TS + + P + V+G+S VALE A A G V ++ R Sbjct: 47519 AAPCIPPIDGLAEVPFWTSTEALASDQIPRRLAVIGSSAVALELAQAYARLGSRVWILAR 47698 Query: 477 SILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIE 536 L D + + +G+ + G +R V + G + + + ET Sbjct: 47699 HGLCTRTDPLVGDTLGAALVSDGRIEIRCHTRVERVRYRDG------LFTMTLDSQETSV 47860 Query: 537 GVYNTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPE 596 V + +L+A GR T + L+ GV + SG +PVND QTNVP +YA GD + P+ Sbjct: 47861 EV-DALLVACGRRPNTAALQLDAAGVHWDAASGTVPVNDRMQTNVPNIYAAGD-CTNMPQ 48034 Query: 597 LTPVAIQSGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 656 L VA +G A ++ G K D VP +FT + GL+E +A + + + Sbjct: 48035 LVYVAAAAGTRAAIQMTGGD-AKLDLSLVPWVIFTDPQVAAVGLTEAEAHALGLQTQVRT 48211 Query: 657 YHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLT 716 P V G + + K++ + R++G + A ++ A AM+ GLT Sbjct: 48212 LPVTNVPRS-IVHGEKYG--FLKVVAD-ITSKRILGAQAVASEASDMIATVAVAMRGGLT 48379 Query: 717 KQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGC 752 L + + + T E + +S D+ + C Sbjct: 48380 VPDLAELLIPYLTASEAVKL--VAQSFTRDVQKLSC 48481 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 79.7 bits (195), Expect = 4e-15 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Frame = -2 Query: 173 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQV-DDGARVQEVLSEITNQKTV 231 L+ VV+FSKS+C +VK L L ++ELD++ +DG +Q +L T Q+TV Sbjct: 1599566 LVASQPVVVFSKSWCGFCAQVKSLMQELQAPAQIIELDELGNDGIEIQNLLYGWTGQRTV 1599387 Query: 232 PNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262 PN+F+ H+GGC +T +AY+ G L L++E Sbjct: 1599386 PNVFIGGKHIGGCSETMEAYERGELVTLIKE 1599294 Score = 37.7 bits (86), Expect = 0.017 Identities = 63/250 (25%), Positives = 101/250 (40%), Gaps = 24/250 (9%) Frame = -3 Query: 398 TNKKGQETYYTAAQFVIATGERPRYL---GIQGDK-------EYCITSDDLF-SLPYCPG 446 T K G + Y + +IATG +L G+QG +D L+ ++ C G Sbjct: 1024912 TAKDGSK--YGYGKLLIATGSDALHLDELGMQGAHLGGIHYLREIAEADKLYEAMKACAG 1024739 Query: 447 K-TLVVGASYVALECAGFLAGFGLDVTVMVRS--ILLRGFDQEMAEKVGSYMEQHGVKFL 503 K +VVG Y+ LEC L G+ VT++ ++ R F E+A Q GV F+ Sbjct: 1024738 KHAVVVGGGYIGLECTAALVINGVRVTMVFPEPHVMARLFTPEIAAHYERIYAQKGVNFI 1024559 Query: 504 RKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVK 563 + V+ ++ G++K + V L+ +G + R LE G Sbjct: 1024558 KG--TVVDSFADENGSGQVKYVRLKN------GPVLEADLVVVGVGAKPRTTLLE--GAL 1024409 Query: 564 INEKSGKIPVNDVEQTNVPYVYAVGDILE----------DKPELTPVAIQSGKLLAQRLF 613 E G I V+ +T+ V+ GD++ + E A QS + Sbjct: 1024408 AMEARG-IKVDGHLRTSHADVFGAGDVITFPLKMYGNRMARVEHVGHARQSAMHAVDVMM 1024232 Query: 614 GASLEKCDYI 623 GA+ E DY+ Sbjct: 1024231 GATTEPYDYL 1024202 >dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, complete genome, complete sequence Length = 536163 Score = 77.0 bits (188), Expect = 3e-14 Identities = 40/90 (44%), Positives = 56/90 (62%) Frame = -2 Query: 173 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 232 L ER VVIFSK+YC VK LF LG+ LELD + G+ +Q +L E+T Q+TVP Sbjct: 41591 LAERDVVVIFSKTYCGFCAAVKRLFERLGIRYRALELDILPLGSAMQRILYEMTGQRTVP 41412 Query: 233 NIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262 +++V H+GG D + +++G L LL E Sbjct: 41411 SVWVRGRHLGGNDAVQELHRTGRLLPLLDE 41322 >dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, complete genome, complete sequence Length = 457013 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -3 Query: 286 AAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCI 320 AA K V D V SP+ ++WG G+CV++GC+ Sbjct: 108936 AAETSMKSSVRDAV--SPEASTWGTLGSCVSLGCL 108838 Score = 29.6 bits (65), Expect = 4.7 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Frame = -3 Query: 328 AALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLR--EKAVAYVNS 385 AAL D ++ WE RH WE A++ + + + RL R E A + Sbjct: 66822 AALEAAGCMDDQRRSWE-----RHRWEAELAAMRTQVDQMRFSRRLVEREVESLRADIVR 66658 Query: 386 YGEFVEHHKIKATNKKGQETYYT 408 + ++ + A + G ET+ T Sbjct: 66657 LQKLLQRYLQDAVREAGPETWCT 66589 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,398,929 Number of Sequences: 20 Number of extensions: 245260 Number of successful extensions: 1536 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1347 Number of HSP's gapped (non-prelim): 503 length of query: 754 length of database: 5,515,582 effective HSP length: 103 effective length of query: 651 effective length of database: 5,513,522 effective search space: 3589302822 effective search space used: 3589302822 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)