TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Homo sapiens # Complete (524 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000615.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 290 1e-78 gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 250 1e-66 gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 216 6e-63 gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 106 4e-23 gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 105 5e-23 gb|CM000625.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 96 4e-20 gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 91 2e-18 gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 75 9e-14 gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 32 0.89 >gb|CM000615.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 13, whole genome shotgun sequence Length = 887524 Score = 290 bits (742), Expect = 1e-78 Identities = 159/369 (43%), Positives = 229/369 (62%), Gaps = 19/369 (5%) Frame = +1 Query: 39 DYDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH 98 DYD A AKEAA LG KVA +D+V+PSP GT WGLGGTCVNVGCIPKKL H Sbjct: 377488 DYDLVVIGGGSGGMAAAKEAAVLGAKVACLDFVKPSPAGTTWGLGGTCVNVGCIPKKLFH 377667 Query: 99 QAALLGGLIQ-DAPNYGWEVAQP------------VPHD-----WRKMAEAVQNHVKSLN 140 +LL ++ D P++G + +P VP W + E +QN+++ LN Sbjct: 377668 IGSLLHESVRKDTPSFGIRLGEPNGASATDELSGIVPDPSTQMRWELVRENIQNYIRGLN 377847 Query: 141 WGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEG 200 + +RV+L++++V YFN A F D+HT+ V K G+ L++A ++A GGRP P EG Sbjct: 377848 FKYRVRLREKEVTYFNKLAKFTDKHTIEAVDKKGRSSLITAARFLVAVGGRPS-PLSCEG 378024 Query: 201 ALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQM 260 A E+ I+SDD+F +++ PGKTL VGASY++LECAGFL G+GLD T+ +RSI LRGFD++ Sbjct: 378025 A-EHAISSDDVFAMEKCPGKTLCVGASYISLECAGFLAGMGLDVTVAVRSILLRGFDREC 378201 Query: 261 SSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVP 320 + + ++M HG RF R PS++ ++ GQ +V + D T +DTVL A+GR+ Sbjct: 378202 ADKIGDYMVDHGVRFKRDVIPSKLEKIETGQTKVLFSDGT-----EEVYDTVLAAVGRMA 378366 Query: 321 DTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVE-GRPELTPIAIMAGRLLV 379 DT L LE GV+T+P ++I + E T P+IYAIGDV++ + + + + +LL Sbjct: 378367 DTDKLGLESVGVETNPKNRRI-IGKFEQTHCPNIYAIGDVLDVSQRDAHTLPVRVDKLLT 378543 Query: 380 QRLFGGSSD 388 F G+ + Sbjct: 378544 FCFFWGTEN 378570 Score = 178 bits (452), Expect = 6e-45 Identities = 86/161 (53%), Positives = 114/161 (70%), Gaps = 1/161 (0%) Frame = +2 Query: 365 PELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHV 424 PELTP+AI AG L +RLFGG + MDY NV TTVFTP+EY CVGLSEE+AVA++GQ ++ Sbjct: 378572 PELTPVAIQAGLYLARRLFGGDKEAMDYQNVCTTVFTPIEYACVGLSEEDAVAKYGQNNI 378751 Query: 425 EVYHAHYKPLEFTVA-GRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKC 483 EVYH + PLE++++ R + Y K++ + P + VLG+H++GPNAGEV QG+ +K Sbjct: 378752 EVYHREFVPLEWSLSMSRSHNAAYTKVIVDKSPQENVLGIHYVGPNAGEVMQGYGTSMKQ 378931 Query: 484 GASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG 524 G + + TVGIHPT SEE+V L I+K SG D GC G Sbjct: 378932 GLTLKTLTDTVGIHPTSSEEIVTLSITKSSGEDAAAGGC*G 379054 Score = 28.5 bits (62), Expect = 9.8 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 9/44 (20%) Frame = +3 Query: 305 DTGTFDTVLWAIGRVPDTRSL---------NLEKAGVDTSPDTQ 339 D G +TV WA+GR P +RS+ +L+ +++ PD++ Sbjct: 461283 DGGRIETVKWAVGRRPLSRSICDLCFCKGKDLDSGFLESEPDSR 461414 >gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun sequence Length = 662217 Score = 250 bits (639), Expect = 1e-66 Identities = 175/480 (36%), Positives = 256/480 (53%), Gaps = 11/480 (2%) Frame = -3 Query: 39 DYDXXXXXXXXXXXACAKEAAQL-GRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLM 97 D+D + AK AAQ+ G++VAV++ G RWG GTCVNVGC+PKK+M Sbjct: 115510 DFDYVVIGGGSGGVSSAKRAAQVYGQQVAVIE-------GNRWG--GTCVNVGCVPKKIM 115358 Query: 98 HQAALLGGLIQ-DAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFN 156 +QAA + +++ DA Y + W + + ++ LN + L+ V F Sbjct: 115357 YQAATMREMLKHDAAMYEFPQPSDTTIRWGALKDKRDKYIVRLNNIYANGLRSAGVTAFQ 115178 Query: 157 IKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKE 216 D HT+ G + ++AD I+IATGG+P P EG +E+ ITSD F L+ Sbjct: 115177 GFGELQDPHTILVHQNDGTQQTITADKILIATGGKPMVPPG-EGVVEHTITSDGFFELET 115001 Query: 217 SPGKTLVVGASYVALECAGFLTGIGLDTTIMMR-SIPLRGFDQQMSSMVIEHMASHGTRF 275 P K +VVGA Y+A+E AG L +G +++R S LR FD +S + M + G + Sbjct: 115000 QPDKVVVVGAGYIAVELAGVLNALGSQVHLVVRKSQALRDFDPDISKFLDREMVNAGIQI 114821 Query: 276 LRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTS 335 R G+ V D+ T + D VL A GRVP T N+E G+ T Sbjct: 114820 HRNTGGVLRVEEVHGKKTVFCVDNLTVIDGA---DVVLMAPGRVPMTDIPNVEGLGLSTV 114650 Query: 336 PDTQK----ILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDL-M 390 Q+ I+VD + TSV +I+AIGDV G ELTP+AI AGR L R+FGG + + Sbjct: 114649 GVKQRPSKHIVVDDYQNTSVDNIFAIGDVC-GIVELTPMAIAAGRRLADRVFGGQAPMKA 114473 Query: 391 DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPL---EFTVAGRDASQCY 447 Y+ VPT VF+ G VGL+E +A+A++G E++++Y + + L F + D + Y Sbjct: 114472 SYELVPTVVFSHPPIGTVGLTEPQAMAKYGPENIKLYTSTFVNLYYSMFDMEPADKPKTY 114293 Query: 448 VKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKL 507 +K++C Q V+GLH +G E+ QGF + +K GA+ A V IHPT SEE+V + Sbjct: 114292 MKIICAGVEEQ-VVGLHLIGMAVDEILQGFGVAMKMGATKADFDACVAIHPTASEELVTM 114116 >gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun sequence Length = 1007773 Score = 216 bits (551), Expect(2) = 6e-63 Identities = 157/434 (36%), Positives = 223/434 (51%), Gaps = 8/434 (1%) Frame = -3 Query: 96 LMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYF 155 +M AA + + D +YG+ + DW + +A ++ LN + L + V Sbjct: 811031 VMWNAASIAESVHDMSHYGFSGMDNITFDWNVLKQARDKYIARLNGIYDRNLDNSGVTKI 810852 Query: 156 NIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLK 215 AS V G I +A HI+IA GG P +P EG EY I+SD F L+ Sbjct: 810851 LGYASLSGPGEVHIQPSEGDPIKYTAKHILIAVGGVPVFPKG-EGIEEYAISSDGFFELE 810675 Query: 216 ESPGKTLVVGASYVALECAGFLTGIGLDTTIMMR-SIPLRGFDQQMSSMVIEHMASHGTR 274 E P K +VVGA Y+A+E AG L +G DT +++R LR FD+ + + E M G Sbjct: 810674 ELPRKAVVVGAGYIAVELAGVLQALGTDTKLVVRKGQALRHFDEILRDTLDEEMQRQGIE 810495 Query: 275 FLRGC-APSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVD 333 R ++ DG V ++ G++ G DTVL A GR P+ LNL + GV+ Sbjct: 810494 IYRNTDGVEKIEADSDGLKTVYLQN---GEKIEGV-DTVLMAPGRRPNVDRLNLVELGVE 810327 Query: 334 TSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGG---SSDLM 390 I + T+V IYA+GDV G ELTP+AI AGR L RLFGG + Sbjct: 810326 QKKGGY-IAANEYSETNVDGIYALGDVC-GNVELTPMAIAAGRRLADRLFGGPAFKDAKV 810153 Query: 391 DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEF---TVAGRDASQCY 447 YD VPT VF+ G +GLSEEEA ++G+E+V+VY + + L + + D + Sbjct: 810152 SYDLVPTVVFSHPTIGTIGLSEEEAKEKYGKENVKVYRSKFANLYYGPWQIEPEDKPKTA 809973 Query: 448 VKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKL 507 +K++C E +LV+GLH +G A E+ QGF + +K GA+ A T+ IHPT +EE V + Sbjct: 809972 MKLICAGE-NELVVGLHVIGMGADEMLQGFGIALKMGATKADFDATIAIHPTAAEEFVTM 809796 Query: 508 RISKRSGLDPTVTG 521 GL P TG Sbjct: 809795 ---FPWGLSPQKTG 809763 Score = 43.5 bits (101), Expect(2) = 6e-63 Identities = 24/57 (42%), Positives = 28/57 (49%) Frame = -1 Query: 39 DYDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKK 95 D+D A A+ AA G KVAV + LGGTCVNVGC+PKK Sbjct: 811261 DFDFFVIGAGSGGMASARRAATYGAKVAVTEVAR---------LGGTCVNVGCVPKK 811118 >gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun sequence Length = 1098047 Score = 106 bits (264), Expect = 4e-23 Identities = 107/355 (30%), Positives = 156/355 (43%), Gaps = 10/355 (2%) Frame = -3 Query: 55 AKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYG 114 A +A QLG K A V+ R LGGTC+NVGCIP K + Q++ DA + Sbjct: 234402 AIKAGQLGLKTACVEM--------RGRLGGTCLNVGCIPSKALLQSS---HHYHDAKTHF 234256 Query: 115 WE---VAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVA 171 + V V D KM A V++L G + V+YF K S + V Sbjct: 234255 ADHGIVIDNVSMDIAKMQTAKAASVEALTGGIEYLFKKNNVEYFKGKGSISGPNGVNVEL 234076 Query: 172 KGGKEILLSADHIIIATGGR--PRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYV 229 G + +I+IATG P P + A + S + + P VVG + Sbjct: 234075 LDGGTESIDTKNIVIATGSEVSPLPPVPVHNAGGKIVDSTGALDIDKIPETMAVVGGGVI 233896 Query: 230 ALECAGFLTGIGLDTTI---MMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRR 286 LE + +G T+ M R P D +++ + G +F ++V + Sbjct: 233895 GLEMGSVWSRLGTKVTVIEFMDRLCP--AMDIELTKKFQTTLKKQGFKF---NLKTKVVK 233731 Query: 287 LPDGQ--LQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVD 344 G+ + +T E S G E T TFD VL A GR P T L LE G++ +++VD Sbjct: 233730 SEVGENGVTLTTEKSKGGGEKTETFDIVLVATGRRPFTEGLGLEALGIE-QDKLGRVVVD 233554 Query: 345 SREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTV 399 + T+VP IYAIGD + G P L A G + V G + ++YD +P T+ Sbjct: 233553 AHFRTAVPSIYAIGDCING-PMLAHKAEEEG-IAVTETIAGFAGHVNYDAIPGTL 233395 Score = 46.2 bits (108), Expect = 5e-05 Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Frame = -1 Query: 386 SSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGR--DA 443 SS L+D V ++T E VG +EEE + E Y+ P R + Sbjct: 233318 SSYLIDNTGV---IYTYPEVASVGKTEEELI-----EAGIKYNKGTFPFSANSRARANGS 233163 Query: 444 SQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 502 ++ VK++ E + +LG H +GPNAGE+ + I+ GAS + RT HPT SE Sbjct: 233162 TEGLVKVLADAETDK-ILGAHIIGPNAGEMIAEAVIAIEYGASSEDLARTCHAHPTLSE 232989 >gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome shotgun sequence Length = 1029019 Score = 105 bits (263), Expect = 5e-23 Identities = 95/340 (27%), Positives = 157/340 (46%), Gaps = 10/340 (2%) Frame = +3 Query: 176 EILLSADHIIIATGGRPRYPTHIEGALEYGITSDDI-FWLKESPGKTLVVGASYVALECA 234 E +L ++ATGGRP P I G E T+++I F L+ P + +++GA VALE A Sbjct: 332655 ETVLKFKKAVVATGGRPAIPG-IPGLKESPHTTNEILFNLQVLPPRMVILGAGVVALEMA 332831 Query: 235 GFLTGIGLDTTIMMRSIPL---RGFDQQMSSMVIEHMASHGTRFLRGCAP--SRVRRLPD 289 G T++ RS PL + D + + ++ + + G FL G +R D Sbjct: 332832 QCFATFGSKVTVLQRSEPLFASKQGDAEAAHILQQELEKSGVHFLTGSITRVETLRDKTD 333011 Query: 290 GQLQVTWEDSTTGKEDTGT---FDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSR 346 L++ T + + +L A GRV + + LE+AGV+ + D Sbjct: 333012 DPLELPLLKVTVNTDADPVDLECECLLVAAGRVANVEDVGLEEAGVEYELGKGIKVNDLT 333191 Query: 347 EATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYG 406 ++ S P++YA+GD V G P+LT ++ +++VQ + VP ++T EY Sbjct: 333192 QSVSNPNVYAVGDCVAGVPQLTHMSGEMAKMVVQNSLFEDDWKLSSLVVPAVMYTEPEYA 333371 Query: 407 CVGLSEEEAVARHGQEHVEVYHAHYKPLEFTV-AGRDASQCYVKMVCLREPPQLVLGLHF 465 VGL EA A + V+ Y A + + + G + C K+ C R+ ++G Sbjct: 333372 TVGL-YSEANADKQEIEVDTYRAGLEHNDRAILEGSNVGFC--KIFC-RKGTDEIVGATI 333539 Query: 466 LGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVV 505 + AGE+ +L IK G + R + +PT E V+ Sbjct: 333540 VAERAGEMINEISLAIKNGLGLRAIGRNIHSYPTTGEAVM 333659 Score = 47.0 bits (110), Expect = 3e-05 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Frame = +1 Query: 310 DTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREAT--SVPHIYAIGDVVEGRPEL 367 D L A+GR P+T +LNL AG+ + +LVDS+ T + ++YA GD++ GRP L Sbjct: 126127 DAYLAAVGRKPNTGNLNLNAAGIQVD-EYGGVLVDSQLCTTANAGNVYAAGDIL-GRPFL 126300 Query: 368 TPIAIMAGRLLVQRLFG 384 + G+ + +FG Sbjct: 126301 ASTGVAQGKASITSMFG 126351 Score = 33.1 bits (74), Expect = 0.40 Identities = 17/61 (27%), Positives = 32/61 (52%) Frame = +1 Query: 54 CAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNY 113 C ++A+ G K A++ + GG C+NVGC+P K + +AA ++ + ++ Sbjct: 332329 CTNKSARRGAKSALI---------SEKLAGGDCLNVGCVPSKALIRAARAVAEVRRSADF 332481 Query: 114 G 114 G Sbjct: 332482 G 332484 >gb|CM000625.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 23, whole genome shotgun sequence Length = 512847 Score = 96.3 bits (238), Expect = 4e-20 Identities = 114/483 (23%), Positives = 194/483 (40%), Gaps = 35/483 (7%) Frame = +2 Query: 55 AKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNY- 113 A +A +G KVA+++ LGG C+NVGC+P K + +A L +Q+ + Sbjct: 378902 AAGSAGVGAKVALIE---------AHMLGGDCLNVGCVPSKTIIHSANLAHQVQNQTHLA 379054 Query: 114 --GWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRK--VKYFNIKASFVDEHTV-- 167 G V V D+ K+ E V+ +++ + ++ V+ + A F E TV Sbjct: 379055 EAGIAVEGHVTVDFEKVMERVRKIRSTISHHDSAERYSKELGVEIYIGWAMFTSERTVEV 379234 Query: 168 ---------CGVAKGGKEILL-----------SADHIIIATGGRPRYPTHIEGALEYGIT 207 +A GG +LL + D + RP+ +T Sbjct: 379235 NGKTLHFKKAAIATGGYPVLLPMPGLQEIYKKAQDSGAVTNESRPQV-----------MT 379381 Query: 208 SDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRS-IPLRGFDQQMSSMVIE 266 ++ +F L + P +V+GA + LE A L +G+ T++ RS L D+ M +V Sbjct: 379382 NETVFNLTKRPENMVVIGAGVIGLELAQALQRLGVGVTVLGRSGRVLPKEDEDMGLVVKN 379561 Query: 267 HMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTF-------DTVLWAIGRV 319 M G F + L L+ + + ++ G + D VL A GR Sbjct: 379562 QMIQDGVDFRLTVQDYKKIELTGKVLENGYPEMKLTLQEKGNYEPTVLYCDAVLIAAGRA 379741 Query: 320 PDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLV 379 P+ +NLE A V + V+ TS IY +GDV MA ++ Sbjct: 379742 PNVSGMNLEAAKVQFD-KKMGVHVNDNLQTSNKRIYGVGDVCSDFKFTHAADFMARAVIR 379918 Query: 380 QRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVA 439 LF G + + + FT E VGL E++ A++ V+ H+K + +A Sbjct: 379919 NALFFGKEKMSEL-LISYATFTSPEIASVGLYEDDLKAKN--IAFRVFEKHFKDNDRAIA 380089 Query: 440 GRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPT 499 DA+ +V+ + +LG +G AG + L ++ + + +PT Sbjct: 380090 D-DATDGWVRF-RVNAKTDKILGASIVGVGAGNMISEVTLAMQSATGLGSLANVIHPYPT 380263 Query: 500 CSE 502 +E Sbjct: 380264 TAE 380272 >gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 17, whole genome shotgun sequence Length = 703943 Score = 90.5 bits (223), Expect = 2e-18 Identities = 115/488 (23%), Positives = 191/488 (39%), Gaps = 35/488 (7%) Frame = -1 Query: 58 AAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEV 117 A+ LG+ ++D +P+ G +GG C N C+P K + A G + D Sbjct: 316064 ASLLGKSTCLIDQADPTNSGLL-AVGGDCSNAACVPSKALRSIARQG--VSD-------- 315918 Query: 118 AQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEI 177 H R+ A+A N V++ R++ ++ YF FV H + A E Sbjct: 315917 -----HKARQYADAAINAVRARESPDRIR--NKTDLYFVQSCRFVSTHEMEIQAINASEP 315759 Query: 178 L-LSADHIIIATGGRPRYPTHIEGALE----------------YGITSDDIFWLKESPGK 220 L L A +IATG P P + + S FW + K Sbjct: 315758 LRLRARRFLIATGASPIVPETFQAQAKAAGLPLYTYRSILQSVLATESSAPFWKMDGSTK 315579 Query: 221 T--LVVGASYVALECAGFLTGIGLDTTI-MMRSIPLRGFDQQMSSMVIEHMASHGTRFLR 277 L+VG A E L + I ++ L D ++ + +A G Sbjct: 315578 KRLLIVGGGATACELGQTLVRLRPQRDICLVAPSVLPSEDVKLQQAAMNILAKAGIHCHW 315399 Query: 278 GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVP--DTRSLNLEKAGVDTS 335 +R+ LPDG+++++ D FD L +GR P SL+L+ AG+ + Sbjct: 315398 SARLARI--LPDGRVELS--DGAL----LSPFDGALLCLGRSPVDSLESLHLDSAGIAWT 315243 Query: 336 PDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMA----------GRLLVQRLFGG 385 + S + S PH++A GD + P + A A G L FG Sbjct: 315242 NVGVTVHEQSLRSVSAPHVFASGDCADAVPLRSRTAAQAAWTGFYAIRNGALPRVLTFGS 315063 Query: 386 SSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYK---PLEFTVAGRD 442 +S + VP V+T E CVG + E V ++G +V + + + RD Sbjct: 315062 AS---VHPTVPRVVYTDPELACVGKTVSECVLKYGLNGFDVAYCTEEGSDRADMERVERD 314892 Query: 443 ASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 502 S C+V++ + ++LG GP A E+ + I + + V R++ +P+ Sbjct: 314891 TSVCFVELRA-EKRSGIILGCTACGPAAAELANVIGVAITNKLTTSDVARSIFSYPSHGY 314715 Query: 503 EVVKLRIS 510 + +L +S Sbjct: 314714 LLHRLALS 314691 >gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun sequence Length = 683011 Score = 75.1 bits (183), Expect = 9e-14 Identities = 86/370 (23%), Positives = 152/370 (41%), Gaps = 40/370 (10%) Frame = +1 Query: 173 GGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALE 232 G +++ L D II+A G P P + + TSD L P +VG+ Y+ LE Sbjct: 552628 GIRDLFLPQD-IILAPGSIPFVPPGVTVDEKTVYTSDGALELPFVPEWVAIVGSGYIGLE 552804 Query: 233 CAGFLTGIGLDTTIMMRSIPLRG-FDQQMSSMV---------IEH----MASHGTRFLRG 278 + T +G + T + L FD++++ I++ AS T + G Sbjct: 552805 FSDVYTALGSEVTFIEALDNLMPTFDREIAKQAERLLIRDRPIDYRTGVFASEVTPGIPG 552984 Query: 279 CAPSRVRRLPDGQLQVTWEDSTTGKE--------------------DTGTFDTVLWAIGR 318 P ++ + D + + + GK +T D + A GR Sbjct: 552985 EKPVTIKMI-DAKTKYVFIPYILGKVLASRRTYL*LLCHPPNREHVETLEVDACMVATGR 553161 Query: 319 VPDTRSLNLEKAGVDTS------PDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAI 372 VP+T ++ LE+ GV T + ++L + VP+++ IGD G+ L A Sbjct: 553162 VPNTANMGLEEIGVATQRGFVAVNEKMQVLTSHEDGQVVPNVWCIGD-ANGKMMLAHAAS 553338 Query: 373 MAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYK 432 G V+ + G + +++D VP FT E VG +EE+ V + +E + + Sbjct: 553339 AQGISAVENIC-GRAHAVNHDAVPAACFTHPEISMVGPTEEQCVEKAAKEGWTLGKSQGS 553515 Query: 433 PLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMR 492 + A + + V + V+ +H +G +A ++ Q A + G + ++ Sbjct: 553516 FRANSKALAEGEGNGMAKVLFNKETGKVVAVHIIGLHAADLIQECANAVAAGTTVQELSM 553695 Query: 493 TVGIHPTCSE 502 V HPT SE Sbjct: 553696 MVHTHPTLSE 553725 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +1 Query: 82 LGGTCVNVGCIPKKLMHQAA 101 +GGTCVN GC+P K + A+ Sbjct: 552202 VGGTCVNRGCVPSKALLAAS 552261 >gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun sequence Length = 829358 Score = 32.0 bits (71), Expect = 0.89 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = -2 Query: 287 LPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSR 346 +P V D+ TG+E + V AIG P T L+ VD P+ L Sbjct: 135904 IPKQVTGVVLVDTVTGEETKLSCHAVFVAIGHTPATAFLH---GVVDFDPEHDGYLWTQP 135734 Query: 347 EAT--SVPHIYAIGDVVE 362 +T SVP I+A GDV + Sbjct: 135733 HSTQTSVPGIFAAGDVAD 135680 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.320 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,464,003 Number of Sequences: 31 Number of extensions: 243736 Number of successful extensions: 1159 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 1019 Number of HSP's gapped (non-prelim): 260 length of query: 524 length of database: 7,911,228 effective HSP length: 103 effective length of query: 421 effective length of database: 7,908,035 effective search space: 3329282735 effective search space used: 3329282735 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)