TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) #
Homo sapiens # Complete
         (524 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol...   444   e-125

>gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun
              sequence
          Length = 985969

 Score =  444 bits (1141), Expect = e-125
 Identities = 230/490 (46%), Positives = 326/490 (66%), Gaps = 15/490 (3%)
 Frame = -2

Query: 40     YDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ 99
              YD           A AKEAA+ G+KVA+ D+V+PS QGT+WGLGGTCVNVGC+PKKLMH 
Sbjct: 966285 YDLVVIGGGSGGMAAAKEAAKYGKKVALFDFVKPSTQGTKWGLGGTCVNVGCVPKKLMHY 966106

Query: 100    AALLGGLIQ-DAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 158
              +AL+   I  DA  +G + +     +W K+ E ++NH++ LN+ +R  L+   V+Y N  
Sbjct: 966105 SALIASSIHHDAQMFGHKTSSSF--EWGKLVETLRNHIRMLNFSYRTGLRVGNVEYINAL 965932

Query: 159    ASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESP 218
              A  +D H+V     G K+ + S  +I++ATGGRP  P  + GA++Y ITSDDIF+L +SP
Sbjct: 965931 AKLIDPHSVEYEDNGQKKTITSR-YILLATGGRPSIPETVPGAIQYSITSDDIFFLSKSP 965755

Query: 219    GKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRG 278
              GKTLV+GASY+ LE AGFL  +G DTT+ MRSIPLRGFD+Q S  ++E+M + GT+FL G
Sbjct: 965754 GKTLVIGASYIGLETAGFLNELGFDTTVAMRSIPLRGFDRQCSEKIVEYMKATGTKFLVG 965575

Query: 279    CAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDT 338
                P  + ++ +  ++V++ D +  +     F+TVL+A GR PD + LNL   GV+ S D+
Sbjct: 965574 VVPINIEKVNE-NIKVSFSDGSVEE-----FETVLYATGRNPDVKGLNLNAIGVEVS-DS 965416

Query: 339    QKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTT 398
               KI+   ++ATSVP I+A+GD+VEGRPELTP+A+ AG LL +RLF GS++ +DYD VPTT
Sbjct: 965415 GKIIA-PKDATSVPSIFAVGDIVEGRPELTPVAVKAGILLARRLFAGSNEFIDYDFVPTT 965239

Query: 399    VFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQ------------- 445
              VFTP+EYG VGLS E A+A++G++ +E Y + +  LE   A R+  +             
Sbjct: 965238 VFTPIEYGHVGLSSEAAIAKYGEDDIEEYLSEFSTLEIAAAHREKPEHLRENEMDFALPL 965059

Query: 446    -CYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEV 504
               C  K+V ++   + V+G HF+GPNAGE+TQGF+L +K GA+       +GIHPT +E  
Sbjct: 965058 NCLAKLVVVKSQGEKVVGFHFVGPNAGEITQGFSLAVKLGATKKDFDDMIGIHPTDAEVF 964879

Query: 505    VKLRISKRSG 514
                L ++KRSG
Sbjct: 964878 GILEVTKRSG 964849


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,951,692
Number of Sequences: 8
Number of extensions: 47029
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 21
length of query: 524
length of database: 3,034,108
effective HSP length: 96
effective length of query: 428
effective length of database: 3,033,340
effective search space: 1298269520
effective search space used: 1298269520
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)