TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Homo sapiens # Complete (524 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 432 e-128 supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 107 2e-23 supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 35 0.12 supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 30 5.2 supercontig_1.15 of Capsaspora owczarzaki ATCC 30864 29 6.8 supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 29 8.8 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 432 bits (1110), Expect(2) = e-128 Identities = 237/543 (43%), Positives = 318/543 (58%), Gaps = 107/543 (19%) Frame = +3 Query: 53 ACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQ---- 108 A K AA+LG++V V+D+V+PSPQG+ WGLGGTCVNVGCIPKKLMHQA LLG I+ Sbjct: 1734588 AMNK*AAKLGKRVCVLDFVKPSPQGSTWGLGGTCVNVGCIPKKLMHQACLLGEAIEVTKK 1734767 Query: 109 ------------------------------------------------DAPNYGWEVAQP 120 DA +GWEV + Sbjct: 1734768 ARKGQPREAQARAHQTSIEVF*LEHAKTTQTP*LRKPLF*TLV*LAL*DAEKFGWEVEKA 1734947 Query: 121 -VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILL 179 + HDW K+ V +H+ LN+ +RV L++ V Y N F D HT+ K K L Sbjct: 1734948 NIKHDWSKLVMGVSDHIGGLNFAYRVSLRENNVTYLNAYGVFKDAHTIECTDKKRKVTTL 1735127 Query: 180 SADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTG 239 +A+H ++A GGRP+YP I GA E GITSDD+F L +PGKTLVVGASYVALECAGFLTG Sbjct: 1735128 TAEHFVLAVGGRPKYPD-IPGARELGITSDDMFSLPYAPGKTLVVGASYVALECAGFLTG 1735304 Query: 240 IGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRL-PDG-------Q 291 +G DTT+M RSI LRGFDQQ + + +M+ HGT+FLR C P + R+ P+ + Sbjct: 1735305 LGYDTTVMARSIFLRGFDQQCAEQIAAYMSEHGTKFLRRCVPLSLERIEPEADSATGRHR 1735484 Query: 292 LQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDS-REATS 350 ++VTWED + + FDTVL+AIGR T ++ LE G+ + + VD+ E TS Sbjct: 1735485 IRVTWEDGLANEPGSDVFDTVLFAIGREAVTSTIGLEALGLKANASGK---VDAPLEQTS 1735655 Query: 351 VPHIYAIGDVVEGRPELTPIAIM------------------------------------- 373 VP+++AIGDV+ GRPELTP+AI Sbjct: 1735656 VPNVFAIGDVINGRPELTPVAIQVRVWSSSFAREGLLHSGLCCRGLIPSLPLPRLLPIII 1735835 Query: 374 --------AGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVE 425 AGRLL +RL+GG++ MDY N+PTTVFTPLEYGC+G++EE+A+A + +E++E Sbjct: 1735836 IFSHDDA*AGRLLAKRLYGGATTQMDYANIPTTVFTPLEYGCIGMAEEDAIALYKEENIE 1736015 Query: 426 VYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGA 485 V+H +++PLE+TVA R AS CY K++C + V+GLH LGPNAGE+TQG+ + + Sbjct: 1736016 VFHQYFQPLEWTVAHRPASTCYCKLICNKLDNMRVIGLHILGPNAGEITQGYGVAFR*DG 1736195 Query: 486 SYA 488 +A Sbjct: 1736196 CFA 1736204 Score = 189 bits (480), Expect = 4e-48 Identities = 138/397 (34%), Positives = 199/397 (50%), Gaps = 66/397 (16%) Frame = -2 Query: 178 LLSADHIIIATGGR----------------------PRYPT----------HIEGALEYG 205 + SA HI+IATG PRY + + GA +G Sbjct: 397946 IYSAKHILIATGSYAKVCVQVYAQPFFYRCLFC*LVPRYSSWLGLRCAQLPDVPGA-HHG 397770 Query: 206 ITSDDIFWLKESPGKTLVVGASYV--------------------------------ALEC 233 ITSD F L E P K VVGA YV A+E Sbjct: 397769 ITSDGFFELNEQPKKVAVVGAGYVPVFFFGGGLHYLKFEQSVRTDIQMRHT*SRYIAVEL 397590 Query: 234 AGFLTGIGLDTTIMMRSIP-LRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQL 292 AG +G + ++++R LR FD + V E + + G L S V + G L Sbjct: 397589 AGIFRALGSEVSLLVRHDGVLRKFDSMLHKGVEEELTASGVNLLLNTHVSSVTKDDSGHL 397410 Query: 293 QVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVP 352 + + TT FD ++WAIGR P L+LEK GV D I VD + T+ Sbjct: 397409 SLALTNGTT----QSGFDCLVWAIGRSPTIEDLDLEKTGVSLDKDGL-IKVDEFQNTTHE 397245 Query: 353 HIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDL-MDYDNVPTTVFTPLEYGCVGLS 411 I+A+GDV +LTP+AI AGR L +RLF G +DL ++Y+N+ + VF+ G VGLS Sbjct: 397244 GIHAVGDVAS-HWQLTPVAIAAGRRLSERLFAGKTDLKLEYENIASVVFSHPALGTVGLS 397068 Query: 412 EEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAG 471 EE+A+A+HG++++++Y A + + ++ R ++ VK+VCL + + V+G+H +G A Sbjct: 397067 EEDAIAKHGKDNLKIYSATFTNMYHSMTTRK-TKTRVKLVCLGKEEK-VIGVHVIGIGAD 396894 Query: 472 EVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLR 508 E+ QGFA+ +K GA+ AQ TV IHPT SEE+V LR Sbjct: 396893 EMIQGFAVAVKMGATKAQFDDTVAIHPTASEELVTLR 396783 Score = 45.4 bits (106), Expect(2) = e-128 Identities = 22/41 (53%), Positives = 25/41 (60%) Frame = +2 Query: 484 GASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCUG 524 GA+ TVGIHPTCSE L I++ SGLDP GC G Sbjct: 1736276 GATKDDFDMTVGIHPTCSENFTTLDITRASGLDPGAKGC*G 1736398 Score = 40.8 bits (94), Expect = 0.002 Identities = 16/31 (51%), Positives = 23/31 (74%) Frame = -2 Query: 87 VNVGCIPKKLMHQAALLGGLIQDAPNYGWEV 117 VNVGC+PKK+M A + + DAP+YG++V Sbjct: 398453 VNVGCVPKKVMWNTASMAEALHDAPDYGFDV 398361 Score = 30.8 bits (68), Expect = 2.3 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 2/169 (1%) Frame = +1 Query: 259 QMSSMVIEHMAS-HGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG 317 Q SS+ + H + HGT LR +R+ G+ T D E G L +G Sbjct: 1903924 QSSSLALLHARTEHGTEVLRAGGKNRLV----GEKHFTVNDKRH-VEKVGA-SHALEEVG 1904085 Query: 318 RVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPI-AIMAGR 376 V R+L++ KA ++ +++ E ++P Y +G + + + ++A Sbjct: 1904086 HVEIKRALSMSKAKKNSPICMSEMMPQRHEKNTLPSSY-LGRINRAQLLFALLWHLLASN 1904262 Query: 377 LLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVE 425 L Q+ +L +N+ FT E VG + RH EH E Sbjct: 1904263 NLHQKTLLELLELGRANNLGIVAFTHDEVETVGFEVAKLERRHNSEHRE 1904409 >supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 Length = 955311 Score = 107 bits (267), Expect = 2e-23 Identities = 98/355 (27%), Positives = 163/355 (45%), Gaps = 3/355 (0%) Frame = -1 Query: 117 VAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKE 176 + + V D K+ A V L G + L+ KV Y V GG Sbjct: 534762 LVENVKLDLPKLMAAKDKAVTGLTGGVEMLLKKNKVDYVKGHGKITGAQEVTVDLLGGGS 534583 Query: 177 ILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGF 236 +L A I+IATG I + ++S LK P K +V+G + LE Sbjct: 534582 QVLKAKRILIATGSEVTPFPGIAIDEQTIVSSTGALALKAVPKKMIVIGGGVIGLELGSV 534403 Query: 237 LTGIGLDTTIM--MRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQV 294 + +G + T++ + I G D +++ + G F + + +G ++V Sbjct: 534402 WSRLGAEVTVVEFLGGIGGAGIDGEVAKNFQRVLTKQGLNFKLNTKVTGATKQANGSVKV 534223 Query: 295 TWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHI 354 E + ++T D +L AIGR P T +L L++AGV + ++ V++ T+VP I Sbjct: 534222 NVESADGSVKETLDADVLLVAIGRRPYTNNLGLKEAGVKVD-NRGRVEVNNMFTTNVPSI 534046 Query: 355 YAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEE 414 YAIGDV++G P L A G L V+ + GG + DY+NVP+ ++T E VG +EE+ Sbjct: 534045 YAIGDVIQG-PMLAHKAEDEGILAVEGMCGGHPHI-DYNNVPSVIYTHPEVAWVGKTEEQ 533872 Query: 415 AVARHGQEHVEVYHAHYKPLEFTVA-GRDASQCYVKMVCLREPPQLVLGLHFLGP 468 A + VE + + + A + + +VK++ ++ Q +LG H +GP Sbjct: 533871 LKA----DGVEYTIGKFPFVANSRAKTNNDTDGFVKVLGDKKTDQ-ILGAHIIGP 533722 Score = 33.9 bits (76), Expect = 0.28 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -3 Query: 79 RWGLGGTCVNVGCIPKKLM 97 R LGGTC+NVGCIP K + Sbjct: 534997 RGALGGTCLNVGCIPSKAL 534941 >supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 Length = 3794667 Score = 35.0 bits (79), Expect = 0.12 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 3/98 (3%) Frame = +3 Query: 306 TGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRP 365 T F ++W G P +++L + + Q ++ T +P++YA+GD P Sbjct: 1739640 THPFGVLVWVTGLAPSPLAVSLSQ--FPKNKQHQFVVDQQLRVTGIPNVYALGDCAAMTP 1739813 Query: 366 EL---TPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVF 400 L +A GR L L SD + P VF Sbjct: 1739814 ALPCTAQVAERQGRYLASVLSNLGSDSAAVASAPPFVF 1739927 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +2 Query: 285 RRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAI 316 R P L+ WEDSTTG+ + G F T AI Sbjct: 2355779 RVTPQRTLRGRWEDSTTGRFNNGNFTTTSQAI 2355874 >supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 Length = 2141673 Score = 29.6 bits (65), Expect = 5.2 Identities = 29/98 (29%), Positives = 39/98 (39%) Frame = +3 Query: 275 FLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDT 334 FLRGC P ++P G D T + DT RVP T S L Sbjct: 318021 FLRGCRPEAFDQVPSGPFSAERNDGKTKQCDTQRVSDQKKQQQRVPRTHSFFLFFV---F 318191 Query: 335 SPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAI 372 P +QKI + + P I ++ G P TPI++ Sbjct: 318192 PPFSQKIQI------TKPTIM----LLLGMPSTTPISL 318275 >supercontig_1.15 of Capsaspora owczarzaki ATCC 30864 Length = 930169 Score = 29.3 bits (64), Expect = 6.8 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -1 Query: 343 VDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLM 390 +D+ A ++ I +GD+ EG EL + G L LFGG +L+ Sbjct: 299446 LDALHALALGQIRGVGDLEEGGSELNKPLWLDGGALSHVLFGGEHELV 299303 >supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 Length = 1292811 Score = 28.9 bits (63), Expect = 8.8 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Frame = +1 Query: 281 PSRVRRLPDGQLQVTWEDSTT----GKEDTGTFDTVLWAIGRVPDTRS 324 PS R L V W +T+ G D G D W I R TRS Sbjct: 427729 PSLTRTLASRTRSVGWTPTTSLLPAGAADAGAADATSWPISRTTTTRS 427872 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.320 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,285,635 Number of Sequences: 89 Number of extensions: 310941 Number of successful extensions: 1499 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 1203 Number of HSP's gapped (non-prelim): 540 length of query: 524 length of database: 9,347,932 effective HSP length: 104 effective length of query: 420 effective length of database: 9,338,676 effective search space: 3922243920 effective search space used: 3922243920 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)