TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Homo sapiens # Complete (524 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl... 239 3e-63 dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 148 5e-36 dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp... 113 2e-25 dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp... 109 3e-24 dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 33 0.28 dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, compl... 32 0.48 dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl... 29 5.3 dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 28 6.9 dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp... 28 9.0 dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp... 28 9.0 >dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete sequence Length = 481791 Score = 239 bits (609), Expect = 3e-63 Identities = 168/480 (35%), Positives = 236/480 (49%), Gaps = 10/480 (2%) Frame = -1 Query: 39 DYDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH 98 D+D A+ +A G +VA+ + LGGTCVNVGCIPKKL Sbjct: 106410 DFDLFVIGGGSGGVRAARVSANHGARVALAESSR---------LGGTCVNVGCIPKKLFS 106258 Query: 99 QAALLGGLIQDAPNYGWEV---AQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYF 155 + +DA YGW++ ++ P DW ++ ++ LN ++ L+ V+ F Sbjct: 106257 YGSHYLHEFEDARAYGWDLPTKSELDPVDWERLIHNKDAEIERLNGVYQRILEKANVRIF 106078 Query: 156 NIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLK 215 + +A FVD H + +A G SA +I++A GGR + GA I SDD F+LK Sbjct: 106077 HERAEFVDAHKI-RLASGET---FSAKYILVAVGGRSNLIADLPGAA-LCIHSDDCFYLK 105913 Query: 216 ESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRS-IPLRGFDQQMSSMVIEHMASHGTR 274 P LV+G Y+ E A G G T + R + LRGFD + + E M G Sbjct: 105912 HLPRSILVLGGGYIGTEFACIFHGYGSKVTQVHRGKLFLRGFDDDVRHFLAEQMRKDGID 105733 Query: 275 FLRGCAPSRVRRLPDGQL---QVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAG 331 GC V +PD +V T G T D VL A+GR P+T L LE+AG Sbjct: 105732 LRFGCNLKAVEAIPDASAPEGRVLKAHLTDGS--TLIVDQVLLAVGRHPNTEGLGLERAG 105559 Query: 332 VDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMD 391 + T ILVD T+V IYA+GDV R LTP+AI G +FGG + Sbjct: 105558 IKTDQHRGHILVDEYSRTNVETIYAVGDVT-NRMNLTPVAIAEGHCFADTVFGGKARAPG 105382 Query: 392 YDNVPTTVFTPLEYGCVGLSE---EEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYV 448 YD VPT VF+ G VGL+E E A G +++Y + ++PL+ T+ RD Q + Sbjct: 105381 YDMVPTAVFSVPPIGMVGLTEARARELDAEQGGTGIDIYRSMFRPLKHTLTKRD-RQTLM 105205 Query: 449 KMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLR 508 K+V R Q VLG H + A E+ Q A+ +K GA+ A +G+HPT +EE+V +R Sbjct: 105204 KLVVDRR-TQRVLGCHLVDDAAPEIIQSVAIALKMGATKADFDNVIGVHPTSAEELVTMR 105028 >dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete sequence Length = 866983 Score = 148 bits (374), Expect = 5e-36 Identities = 137/458 (29%), Positives = 203/458 (44%), Gaps = 10/458 (2%) Frame = +3 Query: 55 AKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKK-LMHQAALLGGLIQDAPNY 113 A +AAQLG K A V+ R LGGTC+NVGCIP K L+H + L P + Sbjct: 757365 AIKAAQLGLKTACVE--------KRGSLGGTCLNVGCIPSKALLHSSHLYEEAKHAFPTH 757520 Query: 114 GWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKG 173 G + V + M + N V+ L G + +V Y + Sbjct: 757521 GIRIEGKVTLELPAMMKQKMNSVRGLTKGIEALFKKNQVTYVKGTGKLASATQIKVRPPD 757700 Query: 174 GKEIL--LSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVAL 231 E + A +IIIATG P + + ++S L P + V+G Y+ L Sbjct: 757701 SDEFAQEIHAKNIIIATGSEPVALPMLPFDEKRVVSSTGALSLPTIPQRMAVIGGGYIGL 757880 Query: 232 ECAGFLTGIGLDTTIMM---RSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLP 288 E +G + T++ R +P D ++ ++ + G +F G + + +P Sbjct: 757881 EMGSVWRRLGAEVTVIEFTDRIVP--AMDHEIGDRFLQILKKQGLKFKLGTKVTGAK-IP 758051 Query: 289 DGQLQVTWEDST---TGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDS 345 VT E + + K++T D VL A GR P T L LE G++ D +I +D Sbjct: 758052 AEPSPVTLELESAKDSSKKETFDADVVLVATGRRPYTAELGLEALGIELD-DRGRIPIDD 758228 Query: 346 REATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEY 405 T VP+IYAIGDVV G L A G + + G + L +YD +P V+T E Sbjct: 758229 AFRTRVPNIYAIGDVVRGAM-LAHKAEDEGIACAETIAGHKAHL-NYDCIPGVVYTHPEV 758402 Query: 406 GCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTV-AGRDASQCYVKMVCLREPPQLVLGLH 464 VG +EEE A + + T AG D +Q VK++ ++ + +LGLH Sbjct: 758403 ASVGKTEEELKAAGIAYNKGTFPFMANSRARTNDAGGDFTQGLVKVLAEKQTDR-ILGLH 758579 Query: 465 FLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 502 +GP AGE+ L ++ GAS + RT HPT SE Sbjct: 758580 IIGPGAGEMIAEGVLAMEYGASSEDIARTCHAHPTLSE 758693 >dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete sequence Length = 1232258 Score = 113 bits (283), Expect = 2e-25 Identities = 132/487 (27%), Positives = 201/487 (41%), Gaps = 23/487 (4%) Frame = -2 Query: 39 DYDXXXXXXXXXXXACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH 98 DYD A A G K AV+ T GGTCVN GC+P K + Sbjct: 590740 DYDLVIIGAGVGGHGAALHARSRGLKTAVL---------TGGDAGGTCVNRGCVPSKALL 590588 Query: 99 QAALLGGLIQDAPNY------GWEVAQPVPHDWRKMAEAVQNHVKSLNW---GHRVQ-LQ 148 AA G +++ G V V +D +AV NH SL G+ VQ L+ Sbjct: 590587 AAA---GKVRELRTVERLQAMGISVRGQVDYD----RQAVSNHANSLASRVRGNLVQSLR 590429 Query: 149 DRKVKYFNIKASFVDEHTVCGVAKGGK--EILLSADHIIIATGGRPRYPTHIEGALEYGI 206 V + + + V V + + E +++A ++IATG P P I+ + Sbjct: 590428 GLGVDVLDARGALVAPQKVELLKPRERTGERVVTARDVVIATGSVPAVPPGIQVDGKTVF 590249 Query: 207 TSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLR-GFDQQMSSMVI 265 TSDD L+ P ++G+ Y+ LE + T +G + T + + L FD ++S Sbjct: 590248 TSDDALKLEWVPEWIAIIGSGYIGLEFSDVYTALGSEVTFIEAAPKLMPSFDAEISRYAE 590069 Query: 266 EHMAS-HGTRFLRGCAPSRVRRLPDGQLQVTWE---DSTTGKEDTGTFDTVLWAIGRVPD 321 + S G ++V GQ V E T + D L A GR P Sbjct: 590068 RLLISPRPVDAYTGVLATKVVPGIPGQKPVHIELVNAETKAPVEVLQVDAALVATGRRPY 589889 Query: 322 TRSLNLEKAGVDTS----PDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRL 377 T L LEK GV + P + V + H+Y IGD G+ L A G Sbjct: 589888 TDGLGLEKLGVRLNKGFVPVDDHMRVLDETGAPIEHLYCIGD-ANGKLMLAHAASAQGIS 589712 Query: 378 LVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHA--HYKPLE 435 +V+ + G +S + + +P FT E VG +EE+A A +E E+ A H++ Sbjct: 589711 VVEHIAGNTSYRLRMECIPAACFTHPEISMVGFTEEQARAIAERERFELGKALGHFRANS 589532 Query: 436 FTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVG 495 +A A + V R+ +LG+H +G +A ++ A ++ G ++ V Sbjct: 589531 KALAENHAEG--IAKVLFRKDTGELLGMHIIGMHAADLIHEAANAMQTGIPVHKLAFAVH 589358 Query: 496 IHPTCSE 502 HPT SE Sbjct: 589357 THPTLSE 589337 >dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete sequence Length = 839707 Score = 109 bits (272), Expect = 3e-24 Identities = 116/377 (30%), Positives = 166/377 (44%), Gaps = 12/377 (3%) Frame = +2 Query: 53 ACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLI----- 107 A A AA+ G +V VV+ R +GGTCVNVGCIP K + + L Sbjct: 47102 AAAITAAERGAQVHVVE---------RGTIGGTCVNVGCIPSKHLVRCGQLEHWCELHKH 47254 Query: 108 QDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWG--HRVQLQDRKVKYFNIKASFVDEH 165 Q N P D K+ A Q V+ L + RV ++ ++ ++ +A F D Sbjct: 47255 QTVSNAVNGCPCPGMLDAPKLRTARQALVEQLRYQKYERVLGENPRITTWHGEARFHDPQ 47434 Query: 166 TVC--GVAKGGKEI--LLSADHIIIATGGRPRYPTHIEGALEYGI-TSDDIFWLKESPGK 220 +V A G + LL D +IA G P P I+G E TS + + P + Sbjct: 47435 SVWVRTTADDGSRVDTLLRFDRCLIAVGAAPCIPP-IDGLAEVPFWTSTEALASDQIPRR 47611 Query: 221 TLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCA 280 V+G+S VALE A +G I+ R D + + + S G +R Sbjct: 47612 LAVIGSSAVALELAQAYARLGSRVWILARHGLCTRTDPLVGDTLGAALVSDGRIEIRCHT 47791 Query: 281 PSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQK 340 R DG +T + T E D +L A GR P+T +L L+ AGV + Sbjct: 47792 RVERVRYRDGLFTMTLDSQETSVE----VDALLVACGRRPNTAALQLDAAGVHWDAASGT 47959 Query: 341 ILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVF 400 + V+ R T+VP+IYA GD P+L +A AG ++ GG + L D VP +F Sbjct: 47960 VPVNDRMQTNVPNIYAAGDCT-NMPQLVYVAAAAGTRAAIQMTGGDAKL-DLSLVPWVIF 48133 Query: 401 TPLEYGCVGLSEEEAVA 417 T + VGL+E EA A Sbjct: 48134 TDPQVAAVGLTEAEAHA 48184 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 33.1 bits (74), Expect = 0.28 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 3/151 (1%) Frame = -3 Query: 214 LKESPGK-TLVVGASYVALECAGFLTGIGLDTTIMMRS--IPLRGFDQQMSSMVIEHMAS 270 +K GK +VVG Y+ LEC L G+ T++ + R F ++++ A Sbjct: 1024756 MKACAGKHAVVVGGGYIGLECTAALVINGVRVTMVFPEPHVMARLFTPEIAAHYERIYAQ 1024577 Query: 271 HGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKA 330 G F++G +G QV + G D V+ +G P R+ LE A Sbjct: 1024576 KGVNFIKGTVVDSFAD-ENGSGQVKYVRLKNG--PVLEADLVVVGVGAKP--RTTLLEGA 1024412 Query: 331 GVDTSPDTQKILVDSREATSVPHIYAIGDVV 361 + + + I VD TS ++ GDV+ Sbjct: 1024411 ---LAMEARGIKVDGHLRTSHADVFGAGDVI 1024328 Score = 28.9 bits (63), Expect = 5.3 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -3 Query: 307 GTFDTVLWAIGRVPDTRS-LNLEKAGVDTS--PDTQKILVDSREATS 350 G +DTVL + RVP+ +S L + VD+S P +K+L EA S Sbjct: 811813 GFWDTVLSMMRRVPEAKSRLQIRSRNVDSSTVPPCEKVLYTLLEAIS 811673 >dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, complete genome, complete sequence Length = 457013 Score = 32.3 bits (72), Expect = 0.48 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = -3 Query: 58 AAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCI 92 AA+ K +V D V SP+ + WG G+CV++GC+ Sbjct: 108936 AAETSMKSSVRDAV--SPEASTWGTLGSCVSLGCL 108838 >dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete sequence Length = 739753 Score = 28.9 bits (63), Expect = 5.3 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Frame = -1 Query: 54 CAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGC-------IPKKLMHQAALLGGL 106 C A V V PS T G GGT G IP+ + + A G Sbjct: 461131 CRSSAGACSGGVYVAAAACPSDGSTGAGAGGTAGEAGAG*RPRRGIPRSMGRRVA*RGPH 460952 Query: 107 IQDAPNYGWEVAQPVPHDWRKMA 129 DAP YG E + VP R+ A Sbjct: 460951 TGDAPGYGAEPVR-VPSTRRRSA 460886 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +3 Query: 258 QQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDT 306 +Q S ++ AS G R GC R + G + T+ STTG T Sbjct: 406614 RQRSIAPLQRPAS*GERCTTGCFRQRTLPMRQGSIPATYAGSTTGATTT 406760 >dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete sequence Length = 852727 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -2 Query: 98 HQAALLGGLIQ-DAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHR 144 H + LGG+ + D P Y W + + A+++ HV+SL G R Sbjct: 563853 HTSRFLGGIERFDNPGYAWSTLLETRNGAARNAKSLPAHVESLQRGTR 563710 >dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete sequence Length = 908485 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 54 CAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNV 89 C + A+ L R V P P GTRW L G V+V Sbjct: 263114 CIRRASSLSR-------VLPRPCGTRWNLSGFAVSV 263200 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.320 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,349,660 Number of Sequences: 20 Number of extensions: 184487 Number of successful extensions: 951 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 842 Number of HSP's gapped (non-prelim): 345 length of query: 524 length of database: 5,515,582 effective HSP length: 100 effective length of query: 424 effective length of database: 5,513,582 effective search space: 2337758768 effective search space used: 2337758768 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)