TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete #U:498 (499 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349462.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 486 e-137 gb|GL349497.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 244 1e-64 gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 209 4e-54 gb|GL349480.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 144 1e-34 gb|GL349508.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 129 6e-30 gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 92 1e-18 gb|GL349500.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 37 0.031 gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 34 0.26 gb|GL349495.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 5.0 >gb|GL349462.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.30, whole genome shotgun sequence Length = 406747 Score = 486 bits (1250), Expect = e-137 Identities = 254/492 (51%), Positives = 327/492 (66%), Gaps = 2/492 (0%) Frame = -1 Query: 10 SYDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKL 69 SYDYDL+++ V +LDFV P+P GT WGLGGTCVNVGCIPKKL Sbjct: 25564 SYDYDLVVVGGGSGGLSCARQAAKLGAKVAILDFVKPSPQGTAWGLGGTCVNVGCIPKKL 25385 Query: 70 MHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN 129 MH AALL A D++ YGW V + ++H WD +++AV +HIGSLNWGYR ALR++ + Y+N Sbjct: 25384 MHTAALLKGAADDAKAYGWSVPDGLEHSWDTLVDAVGSHIGSLNWGYRTALRDEGIDYKN 25205 Query: 130 AYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYL--GIPGDKEYCISSDDLFSLP 187 G + H +K + K E +YSA+ +IA G RP Y+ +PG E+ I+SDD+F Sbjct: 25204 ELGSIVDAHTVKGVSRKKVETLYSAKYIVIAVGGRP-YVPEDVPGALEHAITSDDIFWRF 25028 Query: 188 YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKF 247 PGKTL VGASYVALE AGFL G+G D TV VRSILLRGFDQ MA K+G++ME G F Sbjct: 25027 DPPGKTLCVGASYVALEIAGFLTGLGYDTTVAVRSILLRGFDQGMAEKVGKYMEHEGTTF 24848 Query: 248 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV 307 R V + + EA G+L+VV +S E EY+TV+ A GR A T +GLE VG+ Sbjct: 24847 KRPVVVDSIAKDEAS--GKLKVVLKSRTDGTTEEEEYDTVLFATGRKADTANLGLENVGI 24674 Query: 308 KINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 367 + KTGKI V + E T V I+A+GD++ D++ELTPVAI AGRLLA RL+ G T +Y Sbjct: 24673 VPDAKTGKIAVDEAEATCVDSIFALGDVI-DQLELTPVAIAAGRLLASRLFDGKTTLMNY 24497 Query: 368 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 427 N+PT VFTPLEYGA GLSEE A ++G +NIEV+H+Y LE T+P R+ N+ YAK+I Sbjct: 24496 TNIPTAVFTPLEYGAVGLSEEDAAAEYGIDNIEVFHTYPQVLEHTVPHREENQVYAKLIV 24317 Query: 428 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKR 487 K ++ V+G H GPNAGEV QG A+ G TK D+T+GIHP AE FT++ +T+ Sbjct: 24316 R-KADDVVIGVHYAGPNAGEVIQGLGIAVMAGATKAMFDATVGIHPTIAEEFTSMEITRA 24140 Query: 488 SGASILQAGCUG 499 SG S L+ GC G Sbjct: 24139 SGKSALRTGC*G 24104 >gb|GL349497.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.65, whole genome shotgun sequence Length = 192353 Score = 244 bits (622), Expect = 1e-64 Identities = 163/432 (37%), Positives = 226/432 (52%), Gaps = 4/432 (0%) Frame = +2 Query: 55 LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV-EETVKHDWDRMIEAVQNHIGSLN 113 LGGTCVNVGC+PKK+M AA L L YG V +E + DW + ++ LN Sbjct: 103553 LGGTCVNVGCVPKKVMWNAANLASTLGYMPGYGLGVSKEALALDWPTLKANRDAYVARLN 103732 Query: 114 WGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGD 173 Y L + + Y G + T G A IATG P Sbjct: 103733 GIYERNLAKANIEYVVGSASVAGKGLVAVTAADGSVTELKAPHVAIATGGYPCIPPEMVG 103912 Query: 174 KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDM 232 E+ I+SD F L P K ++GA Y+A+E AG LA +G +V + VR LR FD D+ Sbjct: 103913 GEHVITSDGFFELEEAPAKAAIIGAGYIAVELAGVLAELGTEVHLYVRKHAALRAFDADV 104092 Query: 233 ANKIGEHMEEHGIKFIRQFVPI-KVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAI 291 + + +E GI + F PI V + E G+L V N E +I+G ++ + AI Sbjct: 104093 VESLTDALEHSGI-ILHTFSPIGSVAKDEVS--GKLTVTTAGENVE-VIDG-FDVAVAAI 104257 Query: 292 GRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGR 351 GR T +GL +GV + + +G I V D + T+V +YA+GD+ +V+LTPVAI AGR Sbjct: 104258 GRCPNTDGLGLAELGVAVQD-SGHIVVDDFQNTSVEGVYALGDVCNKRVDLTPVAIAAGR 104434 Query: 352 LLAQRLYAG-STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLE 410 LA RL+ G +T K DY NV T VF+ G GL+E +A E+FG++ + + S F + Sbjct: 104435 KLAARLFKGDATAKMDYTNVATVVFSHPPIGTVGLTEAEAREQFGDDAVTTFRSRFTNMF 104614 Query: 411 WTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIG 470 + + D K K++C D RV G H+LG A E+ QGFA A+K G TK LD+T Sbjct: 104615 YAMGD-DKPKTMMKLVC-VGDEHRVAGIHILGLGADEIIQGFAVAVKMGATKADLDATCA 104788 Query: 471 IHPVCAEVFTTL 482 IHP AE T+ Sbjct: 104789 IHPTAAEELVTM 104824 >gb|GL349487.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.55, whole genome shotgun sequence Length = 273410 Score = 209 bits (532), Expect = 4e-54 Identities = 154/459 (33%), Positives = 230/459 (50%), Gaps = 31/459 (6%) Frame = +2 Query: 55 LGGTCVNVGCIPKKLMHQAA-LLGQALQDSRNYGW-------------KVE-ETVKHDWD 99 LGGTCVNVGC+PKK+ +A L A D +G K+ T+K D Sbjct: 156863 LGGTCVNVGCVPKKVTWEAVNTLEAANHDLGAFGGYSGPDDARSHVEAKIHYPTLKARRD 157042 Query: 100 RMIE--------AVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEK- 150 +E A++N GS G LRE +++++ G G +GKE Sbjct: 157043 AYVERLNGIYASALKNAGGS--GGSIDILREDARLWKDSDGHVAGV--------EGKETG 157192 Query: 151 -IYSAERFLIATGERPRY-LGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGF 208 + SA +IATG P + + G E SD F+ P VVG Y+A+E AG Sbjct: 157193 TVASASSVVIATGSTPLFPASVAGAAELGSDSDAFFTWSKPPASVAVVGGGYIAVELAGM 157372 Query: 209 LAGIGLDVTVMVRSI-LLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL 267 LA +G + T++VR +LR D +A+ + + G+ + V + G+ G L Sbjct: 157373 LAALGSETTMLVRGPQVLRHIDPQIADVLHSQLTSAGVDLR---LNTGVSAVTKGSDGLL 157543 Query: 268 RVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVP 327 V + ++ G ++ V+ A GR T+ +GL G+++N+ G I V QT++P Sbjct: 157544 EVASPDA---QLPLGMWDKVLFATGRAPLTQGLGLRDAGIELND-AGAIVVDPHHQTSIP 157711 Query: 328 YIYAIGDILEDKVELTPVAIQAGRLLAQRLY---AGSTVKCDYENVPTTVFTPLEYGACG 384 +++AIGD+ +LTPVAI+AGR LA+ L+ A DY +PT +FT G+ G Sbjct: 157712 HVFAIGDVANTPGDLTPVAIKAGRTLAEWLFNPAAAGAPPLDYATIPTVMFTHPPIGSVG 157891 Query: 385 LSEEKAVEKFGEENIEVYHSYFWPLEWTIPS-RDNNKCYAKIICNTKDNERVVGFHVLGP 443 LSE +AV KFG + ++VY + F L + + D +I+ NT D+ERV+G H +G Sbjct: 157892 LSEAEAVAKFGADAVKVYSASFTNLFYGLHEPADKQPTLMRIVVNTADSERVLGIHGIGR 158071 Query: 444 NAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482 E+ QGF A+ G TK LD+TI IHP E T+ Sbjct: 158072 GMDEIMQGFGVAVTMGATKADLDATIAIHPTAGEELVTM 158188 >gb|GL349480.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.48, whole genome shotgun sequence Length = 315632 Score = 144 bits (363), Expect = 1e-34 Identities = 115/434 (26%), Positives = 200/434 (46%), Gaps = 12/434 (2%) Frame = +2 Query: 56 GGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVE-ETVKHDWDRMIEAVQNHIGSLN 113 GGTC+NVGCIP K L+H L + +G V E D +M+E+ Q + +L Sbjct: 131336 GGTCLNVGCIPSKNLLHTTHLYHLSKGYFEEHGIVVPGEGTSIDVAKMMESKQEAVTTLT 131515 Query: 114 WGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG-IPG 172 G ++ V Y +G+ P+ + N G +++ A++ +IATG P L +P Sbjct: 131516 RGIEGLFKKNGVTYSQGWGKITSPNEVTVDLNDGGQEVIPAKKIVIATGSDPIELPFMPY 131695 Query: 173 DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQD 231 D++ +SS +L P K V+G + LE A +G +VTV+ + G D + Sbjct: 131696 DEKKVVSSTGALALEEVPKKMAVIGGGVIGLELGSVWARLGAEVTVIEFMPAIGAGMDAE 131875 Query: 232 MANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAI 291 +A ++ G+KF+ KV + G + + ++ + + + ++++ Sbjct: 131876 IAKNFQRILKRQGLKFM---TSTKVTGADTSGDG-VVIHTEAAKGGKAKSLDVDVALVSV 132043 Query: 292 GRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGR 351 GR +GLE VGV +E+ G + + QTNVP IYAIGD+ D L A + G Sbjct: 132044 GRRRFIDGLGLEDVGVATDER-GMVLTDENFQTNVPSIYAIGDV-RDGAMLAHKAEEEGV 132217 Query: 352 LLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEW 411 +LA+ + G DY ++P+ ++T E G +EE+ E N+ Sbjct: 132218 VLAEAFH-GEGFALDYNSIPSVIYTSPEVAWVGKNEEELKEAGVAYNV-----------G 132361 Query: 412 TIPSRDNNKCYA--------KIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKK 463 T P N++ A K+I + K+ + ++G H++ +A E+ + G + + Sbjct: 132362 TFPMAANSRAKACGYADGMIKVIAD-KETDAILGVHLIAESASELIPEAVLGVAFGASSE 132538 Query: 464 QLDSTIGIHPVCAE 477 + T HP +E Sbjct: 132539 DIAMTCHAHPTQSE 132580 >gb|GL349508.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.76, whole genome shotgun sequence Length = 62085 Score = 129 bits (323), Expect = 6e-30 Identities = 114/420 (27%), Positives = 184/420 (43%), Gaps = 2/420 (0%) Frame = +1 Query: 56 GGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWG 115 GGTC GC PKK++ + A + A + +G DW ++ ++ + Sbjct: 48028 GGTCALRGCDPKKVLRRTAEVVDAARLMNGHGITGPAPTV-DWPALMAFKRSFTDPVPNA 48204 Query: 116 YRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKE 175 A +K + QFIG + I G++++ A +I +G +P L +PG E Sbjct: 48205 REKAFADKGIATFKGTAQFIGENTISV----GEDRL-EARYIVITSGAKPVPLSMPG-AE 48366 Query: 176 YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL-LRGFDQDMAN 234 + I+SDD L P + L++G YV+ E A A G +V ++ R L+ FD D+ + Sbjct: 48367 HVITSDDFLELEALPKRVLLIGGGYVSFEFAHIAARAGAEVVMVDRGERPLKAFDPDLVD 48546 Query: 235 KIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRD 294 + + GI F + +EQ G L V+A+ +EE E + V+ GR Sbjct: 48547 MLVDRTRALGITFRAKAEVTAIEQANGG----LGVIARIDGAEERFEADL--VVHGAGRA 48708 Query: 295 ACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDK-VELTPVAIQAGRLL 353 A + + VK + ++ + TN P +YA GD LTPVA + + Sbjct: 48709 AAISALEPDKANVKADGTGVEVNEYLQSLTN-PAVYAAGDAAATAGPPLTPVASLEAKAV 48885 Query: 354 AQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI 413 A L G+ DY VP+ VFT E GLSE A + E + W +++ Sbjct: 48886 AANLLEGNHATPDYTGVPSAVFTVPELVRVGLSEADATAQGLEFECKFSDMRGW---FSV 49056 Query: 414 PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHP 473 AK++ + R++G H+LGP A E F A++ GL + L + +P Sbjct: 49057 RRVGETHAAAKVLVE-HGSGRILGAHILGPEASETINLFGLAMRTGLKAEDLKGLVSAYP 49233 Score = 120 bits (300), Expect = 3e-27 Identities = 118/437 (27%), Positives = 192/437 (43%), Gaps = 11/437 (2%) Frame = +3 Query: 44 VTPTPLGTRWGL------GGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKH 96 +T LG R L GGTCVNVGC+P K L+ A L Q R G + + Sbjct: 46281 ITAAELGARVALIGHGTIGGTCVNVGCVPSKTLIRAAETLHQGRAAERFAGIEARVGLT- 46457 Query: 97 DWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN-AYGQFIGPHRIKATNNKGKEKIYSAE 155 DW + +G+L + ++ YE Y + G R+ + + A Sbjct: 46458 DWSATVSQKDELVGALR---QAKYKDLLAAYEGITYVE--GRARLATDGVLVEGEPLRAG 46622 Query: 156 RFLIATGERPRYLGIPGDKEYC-ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGL 214 + +I TG RP IPG +E ++S + + P L++G Y+ E A A G+ Sbjct: 46623 KVVITTGARPALPSIPGIEEVSYLTSTTVLEIAELPRSLLIIGGGYIGCELAQLFARAGV 46802 Query: 215 DVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQST 274 +VT+ R LL + ++ + + E+ GI+ +R +K QI G V+ + Sbjct: 46803 EVTIACRRGLLPAAEPEVGTALTGYFEDEGIR-VRS--GLKYRQIRETEDG---VILNAL 46964 Query: 275 NSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGD 334 + E V++A GR T ++GL GV + G I V + +T IYA GD Sbjct: 46965 AEGNDVRLEAERVLIASGRRPNTEEMGLAEAGV-VLLPNGGIEVDERLRTTKAGIYAAGD 47141 Query: 335 ILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKF 394 + + + +A A RL A+ G + + D +P VFT + + GL+E A Sbjct: 47142 V-TGRDQFVYMAAYAARLAAENALNGDSRRYDNAAMPAVVFTDPQVASVGLTEAAA---- 47306 Query: 395 GEENIEVYHSYFW--PLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGF 452 G+ V S + + +RD + K++ ++ +R++G H+L P + Q Sbjct: 47307 GQAGHRVKTSLLSLDQVPRALAARD-TRGLIKLVAE-EETDRLLGAHILAPEGADSIQTA 47480 Query: 453 AAALKCGLTKKQLDSTI 469 A+K GLT +L TI Sbjct: 47481 VLAIKHGLTVAELAETI 47531 >gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence Length = 562821 Score = 91.7 bits (226), Expect = 1e-18 Identities = 113/438 (25%), Positives = 191/438 (43%), Gaps = 14/438 (3%) Frame = -2 Query: 56 GGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE---AVQNHIGSL 112 GG C+NVGC+P K + A +++ YG V ++V D+ +++E ++ I + Sbjct: 90254 GGDCLNVGCVPSKALIAAGHAAYRARNAHEYGVTV-DSVSVDFGQIMERMREIRAEISAD 90078 Query: 113 NWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG 172 + +R L+E V G+FI I+ + + +R IATG RP IPG Sbjct: 90077 DSAHR--LKENGVDVFFGRGKFIDAKSIEVNG-----VVLNFKRACIATGGRPGIPNIPG 89919 Query: 173 DKE-YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQ 230 E +++ +F+L P + V+G + E A A G V + RS +LR + Sbjct: 89918 LAEAEPLTNLSVFNLTELPSRLAVIGTGPIGCELAQTFARFGSLVVLTGRSGSILRNEEP 89739 Query: 231 DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGT---PGRLRVVAQSTNSEEIIEGEYNTV 287 D A + +E G+ + + +E I T G +V + ++ E + + Sbjct: 89738 DAAVVLQAQLEAEGVD-----LRLNLEYISVRTDPETGVKILVVREDGADVETEIVVDEI 89574 Query: 288 MLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAI 347 ++A GR +GLE G++ + G I V D QT +YA GD+ + T +A Sbjct: 89573 LVAAGRKPNVDNLGLEAAGIEYSPLHG-IAVNDSLQTTNSSVYACGDV-ASSFQFTHMAD 89400 Query: 348 QAGRLLAQR-LYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSY- 405 R++ + L+ GS D VP +T E GL E+ +E+ G SY Sbjct: 89399 AMARIVIRNALFFGSAKVTDLV-VPWCTYTYPEVAHVGL-YERDLERAGA-------SYT 89247 Query: 406 FWPLEWTIPSRDNNKCYAK----IICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLT 461 W E + D C ++ + T R++G ++ AGE+ F A+K + Sbjct: 89246 VWKRE--LAHNDRALCESETAGFVKAFTDAKGRILGATIVAEKAGEMISEFTIAIKHKIP 89073 Query: 462 KKQLDSTIGIHPVCAEVF 479 +L + IHP + F Sbjct: 89072 LGELGNV--IHPYPTQAF 89025 >gb|GL349500.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.68, whole genome shotgun sequence Length = 140327 Score = 37.0 bits (84), Expect = 0.031 Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 12/178 (6%) Frame = -2 Query: 192 KTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQ 250 +T +VGA ++ LE A L G+DV ++ ++ D++MA+ + +E + Sbjct: 21259 RTGIVGAGFIGLELADALVASGVDVVLLEYAPQIMPPMDREMADALQTRIEGGSGDALFV 21080 Query: 251 FVPIKVEQIEAGTPGR-LRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGL-ETVGVK 308 V V + T G L ++ + + V++A+G A + GL G+ Sbjct: 21079 AVGDGVIGFRSRTSGHPLEILTAGHEAYPC-----DLVVVAVGVKA---ESGLARDAGIA 20924 Query: 309 INEKTGKIPVTDEEQTNVPYIYAIGDILE--DKVELTPVAI-------QAGRLLAQRL 357 + + G I V +T+ P ++A+GD++E D+V P+++ +AGR++A + Sbjct: 20923 LGAR-GAIAVDASFRTSDPRVFAVGDVVETADRVTGRPMSLALAGPANRAGRIVADTI 20753 >gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.22, whole genome shotgun sequence Length = 456871 Score = 33.9 bits (76), Expect = 0.26 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 4/148 (2%) Frame = +2 Query: 129 NAYGQFIGPH--RIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSL 186 N +G+ GP ++ AT N G I E A G+ I +Y + ++ Sbjct: 294497 NLHGEVAGPTWTQMAATANVGATSITLKESVAWAVGDEI----IIASSDYDWEQTEEVTI 294664 Query: 187 PYCPGKTLVVGASYVALECAGFLAGIGLDVTV--MVRSILLRGFDQDMANKIGEHMEEHG 244 G T+ + + A G+ L V + R+IL+RG A G H Sbjct: 294665 TAVAGNTVTFTPALTYMHYAAIEHGMDLRTEVGHLTRNILIRGAGDSDAQAFGAH----- 294829 Query: 245 IKFIRQFVPIKVEQIEAGTPGRLRVVAQ 272 + + F +K+E +E G+ V+ + Sbjct: 294830 VMALAGFTEVKIEGVEVTKAGQAGVMGR 294913 >gb|GL349495.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.63, whole genome shotgun sequence Length = 205260 Score = 29.6 bits (65), Expect = 5.0 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -2 Query: 51 TRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETV 94 T WG GG+ V C+ ++M AL AL+D NYG E V Sbjct: 3800 TNWGPGGSSVKAACL--EVMDSVALSFPALEDG-NYGQLFVELV 3678 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.319 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,063,875 Number of Sequences: 131 Number of extensions: 279098 Number of successful extensions: 1211 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1138 Number of HSP's gapped (non-prelim): 196 length of query: 499 length of database: 9,560,209 effective HSP length: 104 effective length of query: 395 effective length of database: 9,546,585 effective search space: 3770901075 effective search space used: 3770901075 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)