TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete #U:498 (499 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic s... 214 2e-60 gb|GL291013.1| Polysphondylium pallidum PN500 unplaced genomic s... 156 3e-38 gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic s... 34 0.30 gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 4.4 gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic s... 29 7.5 gb|GL290997.1| Polysphondylium pallidum PN500 unplaced genomic s... 29 7.5 >gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig15, whole genome shotgun sequence Length = 727357 Score = 214 bits (545), Expect(2) = 2e-60 Identities = 132/358 (36%), Positives = 203/358 (56%), Gaps = 2/358 (0%) Frame = -3 Query: 55 LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNW 114 +GGTCVNVGC+PKK+M AA + +AL + YG++ + V + W + + +I LN Sbjct: 503978 MGGTCVNVGCVPKKVMWNAATIKEALHAAPFYGFEGADKVTYHWPTIKKNRDAYIARLNG 503799 Query: 115 GYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDK 174 Y L V N +G+F GP +++ ++Y+A+ LIATG P+ +PG Sbjct: 503798 IYNNMLAGSNVKSINGWGKFTGPRQLEVDG-----QVYTADNILIATGGYPQIPQVPG-A 503637 Query: 175 EYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDMA 233 E I+SD F L P V+GA Y+A+E G L +G ++++R LR FD +A Sbjct: 503636 ELGITSDGFFDLAELPKSVAVIGAGYIAVELVGILNTLGSKSSLVIRHDHFLRTFDDIVA 503457 Query: 234 NKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR 293 +K+ E M GI + + + G++ VV T + +TV+ AIGR Sbjct: 503456 HKLQEQMVTDGINIVTNST---ISALRKTENGQIVVVTNHTELPPV-----DTVIWAIGR 503301 Query: 294 DACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLL 353 D T+ IGLE GV +NE+ G I V + + T ++A+GD+ +K ELTPVAI AGR L Sbjct: 503300 DPSTKGIGLEAAGVSVNER-GYIKVDEFQYTGAQGVFAVGDVTGNK-ELTPVAIAAGRRL 503127 Query: 354 AQRLY-AGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLE 410 A+RL+ +K DYEN+P+ VF+ G GL+E++A+ K+G+EN++VY+S + L+ Sbjct: 503126 AERLFNKQEGLKFDYENIPSVVFSHPPIGTVGLTEKEAIAKYGKENVKVYNSRYVNLQ 502953 Score = 38.1 bits (87), Expect(2) = 2e-60 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = -1 Query: 402 YHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG 459 Y+ F + + + K + K+I K+ E+VVG H +G + E+ QGFA A+K G Sbjct: 502888 YYCSFTNMYYAVVDDYKPKTFMKLIVTGKE-EKVVGIHSIGIGSDEMIQGFAVAIKMG 502718 >gb|GL291013.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig16, whole genome shotgun sequence Length = 228641 Score = 156 bits (395), Expect = 3e-38 Identities = 116/435 (26%), Positives = 216/435 (49%), Gaps = 4/435 (0%) Frame = -2 Query: 47 TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAV 105 T + R LGGTC+NVGCIP K L++ + A NYG KV +V+ D M++ Sbjct: 168955 TVVEKRGKLGGTCLNVGCIPSKALLNASHKYEDAKTKFANYGVKVG-SVELDLAAMMKYK 168779 Query: 106 QNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP 165 + + L G ++ KV Y +G+ GP+ ++ T GK + + + +IATG Sbjct: 168778 EKSVNGLTSGIEGLFKKNKVTYAKGHGKITGPNTVEVTGEDGKVQTITTKNIVIATGSEV 168599 Query: 166 RYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSI 223 L + D++ +SS +L P + +V+G + LE + +G + TV+ + Sbjct: 168598 ASLPNVNIDEQTIVSSTGALALKAVPKRMVVIGGGVIGLELGSVWSRLGAETTVVEFTNR 168419 Query: 224 LLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII-EG 282 + G D ++A K + +E+ +KF + KV + G + V +S + + Sbjct: 168418 IAAGADGEVAKKFQKVLEKQHMKF---HLETKVTSVVKNANGTVTVTVESVGAGGFSGQI 168248 Query: 283 EYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVEL 342 E + V++++GR T +GL+ VGV + +K G++ V D +TNV IYAIGD ++ + L Sbjct: 168247 EADVVLVSVGRRPNTTNLGLDKVGVPM-DKAGRVEVGDHFKTNVKSIYAIGDAIKGPM-L 168074 Query: 343 TPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVY 402 A + G + + L+ GS +Y +P+ ++T E G +EE+ ++ + N+ Sbjct: 168073 AHKAEEEGIAVMEYLHNGSG-HVNYAAIPSVIYTHPEVAWVGKTEEELTKEGIKFNV--- 167906 Query: 403 HSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTK 462 + + + D ++ + K + ++ +R++G H++G AGE+ A++ G + Sbjct: 167905 GKFPYAANSRARTNDESEGFVKFLSDS-STDRILGVHIMGDCAGEMIAESVLAMEYGASS 167729 Query: 463 KQLDSTIGIHPVCAE 477 + + T HP +E Sbjct: 167728 EDVARTCHAHPTLSE 167684 >gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold12, whole genome shotgun sequence Length = 1032189 Score = 33.9 bits (76), Expect = 0.30 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 9/196 (4%) Frame = +1 Query: 154 AERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTL-VVGASYVALEC 205 ++ ++ATG + +G+PG++ Y C D +LP K L VVG A E Sbjct: 986692 SKSIILATGATAKKMGVPGEETYWSKGISACAVCDG--ALPIYRNKHLAVVGGGDTACEE 986865 Query: 206 AGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPG 265 A FL VT++VR +R + M ++ + I+ I + + G Sbjct: 986866 ATFLTHFASKVTMLVRRDEMRA-SKAMQQRV---LTNPKIEIIWNHTLLSAQ----GGDK 987021 Query: 266 RLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEE-QT 324 + Q+ ++E + E + AIG T + G ++TG I +T Sbjct: 987022 LTDLTIQNVLTKEEKKLEVGGLFYAIGHVPNTAFLN----GQIETDETGYIITKGHSTET 987189 Query: 325 NVPYIYAIGDILEDKV 340 NV ++A GD+ +DK+ Sbjct: 987190 NVKGVFACGDV-QDKI 987234 >gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3, whole genome shotgun sequence Length = 2290287 Score = 30.0 bits (66), Expect = 4.4 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%) Frame = -1 Query: 101 MIEAVQNHIGSLNWGYRVALREK-KVVYENA-------YGQFIGPHRIKATNNKGKEKIY 152 +++A +H+G L LR K K +++N+ Y + HRI+ T K +K+Y Sbjct: 1408491 VVDATGHHVGKLASKIAGLLRGKHKPIFDNSATRLCGDYVVVLNAHRIEFTGKKWDQKLY 1408312 Query: 153 SAERFLIATGERPRYLGIPGD-KEYCISSDDL---FSLPYCPGKTLVV 196 ++ G PG K Y + DL S+ C +T+++ Sbjct: 1408311 R------------KHSGYPGGLKVYSFTIFDLIYYLSINICVNQTIII 1408204 >gb|GL291003.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig6, whole genome shotgun sequence Length = 254162 Score = 29.3 bits (64), Expect = 7.5 Identities = 26/94 (27%), Positives = 42/94 (44%) Frame = +1 Query: 190 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIR 249 P KTLV+GA L G G+G ++R FD A K E ++ G +F+ Sbjct: 188674 PSKTLVIGAGVAGLSAIGTAKGLG---------SVVRAFDTRAAAK--EQVKSMGAEFLE 188820 Query: 250 QFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGE 283 + +++ G G +V+ S+E I+ E Sbjct: 188821 ----VHIKESGEGGGGYGKVM-----SKEFIDAE 188895 >gb|GL290997.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold15, whole genome shotgun sequence Length = 551677 Score = 29.3 bits (64), Expect = 7.5 Identities = 18/82 (21%), Positives = 35/82 (42%) Frame = -1 Query: 398 NIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457 N+++ Y ++IPS +N Y T + + FH G N ++ Q LK Sbjct: 422500 NVQIIGQYIKSYTYSIPSFSSNVTYTIDTYPTCSSNGSITFHYAGGNISDI-QVNQVPLK 422324 Query: 458 CGLTKKQLDSTIGIHPVCAEVF 479 + + ++ + P+C + F Sbjct: 422323 FNQMEFKYNTGYSVQPLCGDHF 422258 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.319 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,933,679 Number of Sequences: 42 Number of extensions: 217737 Number of successful extensions: 752 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 719 Number of HSP's gapped (non-prelim): 89 length of query: 499 length of database: 10,980,844 effective HSP length: 105 effective length of query: 394 effective length of database: 10,976,434 effective search space: 4324714996 effective search space used: 4324714996 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)