TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete #U:498 (499 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000075.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 469 e-132 gb|ABWE01000835.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 243 4e-64 gb|ABWE01001242.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 134 4e-31 gb|ABWE01003496.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 68 4e-11 gb|ABWE01000612.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 50 8e-06 gb|ABWE01000605.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 45 2e-04 gb|ABWE01001250.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 8.6 gb|ABWE01000208.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 8.6 gb|ABWE01000054.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 8.6 >gb|ABWE01000075.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont51.5, whole genome shotgun sequence Length = 90922 Score = 469 bits (1206), Expect = e-132 Identities = 252/500 (50%), Positives = 327/500 (65%), Gaps = 10/500 (2%) Frame = +3 Query: 10 SYDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKL 69 SYDYDL++I V VLD+V P+P GT WGLGGTCVNVGCIPKKL Sbjct: 26034 SYDYDLVVIGGGSGGLACSKEAASFGKKVCVLDYVKPSPHGTSWGLGGTCVNVGCIPKKL 26213 Query: 70 MHQAALLGQALQ-DSRNYGWKVE----ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKK 124 MHQ++L+G+ L D ++GW V + DW +++ V ++I S+++ Y+V LR K+ Sbjct: 26214 MHQSSLIGEILHHDCASFGWNVGSVNGQVPTFDWKQLVSNVSSYIKSISFKYKVELRSKQ 26393 Query: 125 VVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLF 184 V YEN G F+ PH +K + K K + +IA G RPR L G E +SSDD+F Sbjct: 26394 VKYENVLGSFVDPHTLKLWHPKKGTKEITTRHVVIAVGGRPRQLACLGG-ELAVSSDDIF 26570 Query: 185 SLPYC-PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHME-E 242 + PGKTLVVGASYVALECAGFL G+G V VMVRSILLRGFDQDMA+KIGE+ME + Sbjct: 26571 WMKQKEPGKTLVVGASYVALECAGFLKGMGYAVKVMVRSILLRGFDQDMASKIGEYMEMQ 26750 Query: 243 HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGL 302 GI+FIR+ VP + ++++G +V T + E ++TV+ A GRD K+GL Sbjct: 26751 SGIEFIRKTVPQSITKLDSGQ----LLVKWITEDGDCFEETFDTVLNATGRDPDVAKLGL 26918 Query: 303 ETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGST 362 + GVK+NEKTG+I V + EQT P +YAIGD++ D ELTPVAIQAGRLL++RLY T Sbjct: 26919 DEAGVKLNEKTGRIWV-NNEQTTTPNVYAIGDVI-DAPELTPVAIQAGRLLSRRLYNEGT 27092 Query: 363 VKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDN---N 419 V+ DY+ + T VFTP+EYG CGLSEE + E++G++++EVYH F PLEW++ + Sbjct: 27093 VQMDYDKICTAVFTPIEYGCCGLSEEDSKEEYGDDSVEVYHKNFVPLEWSLAEQTRIAAE 27272 Query: 420 KCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 479 CY K++C+ N V+GFH LGPNAGEVTQ A+K G T QL T+GIHP AE F Sbjct: 27273 SCYVKVVCDKTRNNFVLGFHYLGPNAGEVTQAMGLAMKLGFTYDQLVDTVGIHPTTAEAF 27452 Query: 480 TTLSVTKRSGASILQAGCUG 499 TTL TK SG S GC G Sbjct: 27453 TTLETTKSSGDSTTGGGC*G 27512 >gb|ABWE01000835.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont130.5, whole genome shotgun sequence Length = 26476 Score = 243 bits (621), Expect = 4e-64 Identities = 151/434 (34%), Positives = 229/434 (52%), Gaps = 4/434 (0%) Frame = -2 Query: 54 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETV--KHDWDRMIEAVQNHIGS 111 GLGGTCVN GC+PKK+M A + L +++Y E DW +M +I Sbjct: 7017 GLGGTCVNFGCVPKKIMFNTAAHVEHLNRAKDYSIHTAEFAFGDFDWSKMKTKRDAYINR 6838 Query: 112 LNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIP 171 L Y+ L +V + +F+ ++++ +++++ + LIA G P +P Sbjct: 6837 LTGIYQRNLGNARVDHVEGIAKFVAKNKVQVA-----DRVFTGKHVLIAPGGVPLKPDLP 6673 Query: 172 GDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQ 230 G + I SDD F L P K VVGA Y+A+E AG + D T+ R +LR F+ Sbjct: 6672 GIN-HVIDSDDFFRLEQQPQKVAVVGAGYIAVEMAGIFHALKSDTTLFCRHDQVLRRFEP 6496 Query: 231 DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLA 290 + + + E ME+ G+ F+R + VE+ G+L +V N E+ +++T++ A Sbjct: 6495 IVRDLVNEEMEKAGVTFVRNMSAVGVEK---QLDGKLTLVVNVHNEEQKFT-DFDTILFA 6328 Query: 291 IGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAG 350 +GR T +GLE +GVK+ E G I V +E T+VP +YAIGD ELTPVAI AG Sbjct: 6327 VGRKPRTEDLGLEDIGVKLAEG-GFIQVDAQENTSVPGVYAIGDATVTGWELTPVAIAAG 6151 Query: 351 RLLAQRLYAGSTVKC-DYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPL 409 R LA RL+ G C +Y +P+ +F+ G G +E +AV K+GEEN++VY S F L Sbjct: 6150 RRLADRLFGGEKDACLNYHQIPSVIFSHPPIGTIGYTEPEAVAKYGEENVKVYTSKFVNL 5971 Query: 410 EWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTI 469 ++ ++ A + + E VVG HV G A E+ QGF A+K TK D+ + Sbjct: 5970 LHSMADPEHKGKTAMKLVTVGEQETVVGVHVAGEGADEMIQGFGVAVKMNATKADFDNIV 5791 Query: 470 GIHPVCAEVFTTLS 483 IHP +E T++ Sbjct: 5790 AIHPTASEELVTMA 5749 >gb|ABWE01001242.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont26.2, whole genome shotgun sequence Length = 16867 Score = 134 bits (336), Expect = 4e-31 Identities = 87/248 (35%), Positives = 133/248 (53%), Gaps = 14/248 (5%) Frame = -2 Query: 266 RLRVVAQSTNSEEIIEGE----YNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDE 321 R+ A TN+ + +G ++ V+ A GR T K+ L+ GV N K G I V + Sbjct: 6525 RVEQAADGTNTLVLTDGSAHCGFDIVIYAAGRVPLTDKLDLDNAGVATN-KHGYIVVNEF 6349 Query: 322 EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG-STVKCDYENVPTTVFTPLEY 380 ++T+ ++A+GD+ LTPVA+ AGR L+ RL+ + YEN+PT VF+ Sbjct: 6348 QETSNSKVFAVGDVCGTPA-LTPVAVAAGRKLSDRLFGNMKDARVSYENIPTVVFSHPPI 6172 Query: 381 GACGLSEEKAVEKFGEENIEVYHSYFWPL---------EWTIPSRDNNKCYAKIICNTKD 431 G GL+E++A K+G+++I+VY S+F + E T ++ K K++C K Sbjct: 6171 GTIGLTEKQAQGKYGDDDIKVYTSHFVNMYYGLINEVDEATGELKEKPKTAIKLVCAGK- 5995 Query: 432 NERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGAS 491 E+VVG H++G A E+ QGF A+K G TK D+ I IHP +E TL+ SG Sbjct: 5994 KEKVVGLHMIGMAADEILQGFGVAVKMGATKADFDNCIAIHPTASEELVTLAPWGLSGYE 5815 Query: 492 ILQAGCUG 499 + C G Sbjct: 5814 *AKWICNG 5791 Score = 51.2 bits (121), Expect = 4e-06 Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 8/87 (9%) Frame = -3 Query: 55 LGGTCVNVGCIPKKLMHQAALLGQALQ-DSRNYGWKVEET-------VKHDWDRMIEAVQ 106 LGGTCVNVGC+PKKLM AA + LQ D +YG++ E T + DW ++ Sbjct: 7409 LGGTCVNVGCVPKKLMFLAADMSHKLQHDVVHYGFEKEGTGGSLGAQMHFDWTKLKTRRD 7230 Query: 107 NHIGSLNWGYRVALREKKVVYENAYGQ 133 ++ LN Y RE V YGQ Sbjct: 7229 AYVRRLNGIYERWERE-IVAVNRGYGQ 7152 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = -3 Query: 174 KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRGFD 229 KE CI SD F L P K V+GA Y+A+E AG L +G + ++ R +LR FD Sbjct: 6839 KELCIDSDGFFELDTLPKKVAVIGAGYIAVELAGVLNALGSETSIFCRKEGVLRTFD 6669 >gb|ABWE01003496.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont52.4, whole genome shotgun sequence Length = 1688 Score = 67.8 bits (164), Expect = 4e-11 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 6/175 (3%) Frame = -1 Query: 51 TRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHI 109 +R LGGTC+NVGCIP K L+H LL A + ++YG V ++ +M++A + + Sbjct: 680 SRGKLGGTCLNVGCIPSKALLHSTHLLHTAQHEFKSYGIDA-PNVTANFPQMMKAKEKAV 504 Query: 110 GSLNWGYRVALREKKVVYENAYGQFIGPHRIKAT--NNKGKEKIYSAERFLIATGERPRY 167 +L G + KV Y G+ ++ T + +G + +A+ ++ATG Sbjct: 503 RTLTAGIESLFSKNKVTYIKGVGKLAAKGQVSVTLADRQGNGTL-TAKNIILATGSEVTP 327 Query: 168 L---GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM 219 L + D + S +L P +VVGA + LE +G VTV+ Sbjct: 326 LPPVPVDNDAGKIVDSTGALALTRVPEHLVVVGAGVIGLELGSVYKRLGAKVTVV 162 >gb|ABWE01000612.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont275.1, whole genome shotgun sequence Length = 33811 Score = 50.1 bits (118), Expect = 8e-06 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 21/186 (11%) Frame = -3 Query: 55 LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG--WKVEETVKHDWDRMIEAVQNHIGSL 112 LGG CV+ G IP K +A L + YG + ++ D ++ VQ + S Sbjct: 13721 LGGVCVHTGTIPSKTFREAVLHLSGYRHHGFYGKSYSMKTVTIED---ILYRVQRVVSSE 13551 Query: 113 NWGYRVALREKKVVYENAYGQFIGPHRI---------------KATNNKGKEKIYSAERF 157 R L+ +V + +F H I + +NN A++F Sbjct: 13550 EDVVRAQLKAARVDVIPGFARFESAHEISIVKEGAAKDKAETGQCSNNMDARTRVRADKF 13371 Query: 158 LIATGERPRYLG-IPGDKEYCISSDDLF--SLPYCPGKTLVVGASYVALECAGFLAGI-G 213 L+A G RP + +P D + I SD + + P +VVGA + +E A + + G Sbjct: 13370 LVACGTRPAHNPLVPIDGKIVIDSDQILKRGMQQLPRSLIVVGAGVIGMEYASMINVVPG 13191 Query: 214 LDVTVM 219 VTV+ Sbjct: 13190 HSVTVV 13173 >gb|ABWE01000605.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont52.3, whole genome shotgun sequence Length = 34187 Score = 45.4 bits (106), Expect = 2e-04 Identities = 32/141 (22%), Positives = 61/141 (43%) Frame = -2 Query: 339 KVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEEN 398 K P A + G + + AG +Y +P ++T E+ + G +EE+ + E N Sbjct: 34084 KARCCPQAREEGIACVENI-AGKHGHVNYGAIPNVIYTFPEFASVGKTEEELKAEGVEYN 33908 Query: 399 IEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKC 458 + + T+ D K++ + K ++++G H++ NAGE+ ++ Sbjct: 33907 VGKFPMMANSRARTVAEADG---MVKVLADKK-TDKLLGVHIIASNAGEMISEGVIGIEY 33740 Query: 459 GLTKKQLDSTIGIHPVCAEVF 479 G + L T HP +E F Sbjct: 33739 GAASEDLARTCHAHPTLSEAF 33677 >gb|ABWE01001250.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont97.11, whole genome shotgun sequence Length = 16755 Score = 30.0 bits (66), Expect = 8.6 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = -1 Query: 385 LSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNK---CYAKIICNTK 430 L+E A + E+N+ + Y+W ++ P+ K C+AK +C+ K Sbjct: 8775 LTELSAFVRRAEQNVSLVEDYYWNMKARSPNAGACKDTVCHAKTLCSLK 8629 >gb|ABWE01000208.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont18.12, whole genome shotgun sequence Length = 61391 Score = 30.0 bits (66), Expect = 8.6 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Frame = +2 Query: 177 CISSDDLFSLPYC-------PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFD 229 C+SSD +F+ + G T + + C+ + + LDV ++ +LR +D Sbjct: 27266 CLSSDRIFAWQHARLRT*RGAGLTTAMTCTRFCRCCSSLVTAVYLDVGEVLNLRMLRIYD 27445 Query: 230 QDMAN 234 QDM N Sbjct: 27446 QDMLN 27460 >gb|ABWE01000054.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont113.9, whole genome shotgun sequence Length = 99587 Score = 30.0 bits (66), Expect = 8.6 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Frame = -2 Query: 177 CISSDDLFSLPYCPGKTLVVGASYVALECAGF-------LAGIGLDVTVMVRSILLRGFD 229 C SSD +F+ + +T S A+ C F + + LDV ++ +LR +D Sbjct: 5029 CSSSDGIFAWQHARLRT*RGAGSTTAMTCTRFCRCCSSLVTAVYLDVGEVLNLRMLRIYD 4850 Query: 230 QDMAN 234 QDM N Sbjct: 4849 QDMLN 4835 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.319 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,349,978 Number of Sequences: 5422 Number of extensions: 538316 Number of successful extensions: 2067 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 227 Number of HSP's successfully gapped in prelim test: 74 Number of HSP's that attempted gapping in prelim test: 1756 Number of HSP's gapped (non-prelim): 512 length of query: 499 length of database: 22,486,378 effective HSP length: 109 effective length of query: 390 effective length of database: 21,895,380 effective search space: 8539198200 effective search space used: 8539198200 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 66 (30.0 bits)