TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete #U:498 (499 letters) Database: C.parvum/genome.fa 8 sequences; 9,102,324 total letters Searching........done Score E Sequences producing significant alignments: (bits) Value gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol... 402 e-112 gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol... 30 0.95 gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol... 29 2.8 gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol... 28 3.6 >gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun sequence Length = 985969 Score = 402 bits (1032), Expect = e-112 Identities = 224/506 (44%), Positives = 313/506 (61%), Gaps = 16/506 (3%) Frame = -2 Query: 10 SYDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKL 69 ++ YDL++I V + DFV P+ GT+WGLGGTCVNVGC+PKKL Sbjct: 966294 TFMYDLVVIGGGSGGMAAAKEAAKYGKKVALFDFVKPSTQGTKWGLGGTCVNVGCVPKKL 966115 Query: 70 MHQAALLGQALQ-DSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 128 MH +AL+ ++ D++ +G K + +W +++E ++NHI LN+ YR LR V Y Sbjct: 966114 MHYSALIASSIHHDAQMFGHKTSSSF--EWGKLVETLRNHIRMLNFSYRTGLRVGNVEYI 965941 Query: 129 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG-IPGDKEYCISSDDLFSLP 187 NA + I PH ++ +N G++K ++ L+ATG RP +PG +Y I+SDD+F L Sbjct: 965940 NALAKLIDPHSVEYEDN-GQKKTITSRYILLATGGRPSIPETVPGAIQYSITSDDIFFLS 965764 Query: 188 YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKF 247 PGKTLV+GASY+ LE AGFL +G D TV +RSI LRGFD+ + KI E+M+ G KF Sbjct: 965763 KSPGKTLVIGASYIGLETAGFLNELGFDTTVAMRSIPLRGFDRQCSEKIVEYMKATGTKF 965584 Query: 248 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV 307 + VPI +E++ V+ S S E E+ TV+ A GR+ + + L +GV Sbjct: 965583 LVGVVPINIEKVNENIK-----VSFSDGSVE----EFETVLYATGRNPDVKGLNLNAIGV 965431 Query: 308 KINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDY 367 ++++ +GKI + ++ T+VP I+A+GDI+E + ELTPVA++AG LLA+RL+AGS DY Sbjct: 965430 EVSD-SGKI-IAPKDATSVPSIFAVGDIVEGRPELTPVAVKAGILLARRLFAGSNEFIDY 965257 Query: 368 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNK------- 420 + VPTTVFTP+EYG GLS E A+ K+GE++IE Y S F LE R+ + Sbjct: 965256 DFVPTTVFTPIEYGHVGLSSEAAIAKYGEDDIEEYLSEFSTLEIAAAHREKPEHLRENEM 965077 Query: 421 -------CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHP 473 C AK++ E+VVGFH +GPNAGE+TQGF+ A+K G TKK D IGIHP Sbjct: 965076 DFALPLNCLAKLVVVKSQGEKVVGFHFVGPNAGEITQGFSLAVKLGATKKDFDDMIGIHP 964897 Query: 474 VCAEVFTTLSVTKRSGASILQAGCUG 499 AEVF L VTKRSG S + +G G Sbjct: 964896 TDAEVFGILEVTKRSGESFVSSGGCG 964819 Score = 28.5 bits (62), Expect = 3.6 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -1 Query: 85 NYGWKVEETVKHDWDRMIEAVQNHIGSLNWGY 116 N+ W +++T ++W R + + N+I NW Y Sbjct: 930895 NFLWDLQKTFFNNWTRKLNSSFNNIWLWNWDY 930800 Score = 27.3 bits (59), Expect = 8.0 Identities = 35/121 (28%), Positives = 48/121 (39%) Frame = +2 Query: 368 ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIIC 427 +N+P V +E EE KFG N E Y + I +D K Y C Sbjct: 956978 KNIPNKVRAMIELAMYLAPEECPARKFGTGNKETL--YINSKKNNINLKDALKEY-HTNC 957148 Query: 428 NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKR 487 T DN +V ++GP + E A + GL +T GI + T +VT R Sbjct: 957149 YTSDNASIV---IMGPQSNEELVKIADKID-GLFTNSGKATKGISKI------TNTVTSR 957298 Query: 488 S 488 S Sbjct: 957299 S 957301 >gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence Length = 1344712 Score = 30.4 bits (67), Expect = 0.95 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = -2 Query: 145 NKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPG 191 +KGK+ + + +R + G + RY+ IP + + SS L+S Y PG Sbjct: 959427 SKGKKTVNNVDR-RASKGRKIRYVPIPKLENFMASSPSLYSNSYLPG 959290 >gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun sequence Length = 875659 Score = 28.9 bits (63), Expect = 2.8 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 52 RWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET 93 RW + C N+G P+KL + LL Q + +N KVE T Sbjct: 430156 RWYVNENCANLGLDPEKL---SELLAQRRAEEKNLSNKVELT 430272 >gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence Length = 1332857 Score = 28.5 bits (62), Expect = 3.6 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Frame = +3 Query: 383 CGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPS-RDNNKCYAKIICNTKDNERV 435 C L A + E + H Y W L W PS R N + I +K R+ Sbjct: 606912 CKLDSSDASSFYNESSFTNEHEYVWSLLWNDPSARPNQPLASSISYRSKCQSRI 607073 Database: C.parvum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,102,324 Number of sequences in database: 8 Lambda K H 0.319 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,197,868 Number of Sequences: 8 Number of extensions: 55554 Number of successful extensions: 220 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 196 Number of HSP's gapped (non-prelim): 70 length of query: 499 length of database: 3,034,108 effective HSP length: 96 effective length of query: 403 effective length of database: 3,033,340 effective search space: 1222436020 effective search space used: 1222436020 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)