TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete #U:498
         (499 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.2 of Capsaspora owczarzaki ATCC 30864                   450   e-134
supercontig_1.13 of Capsaspora owczarzaki ATCC 30864                  123   3e-28
supercontig_1.12 of Capsaspora owczarzaki ATCC 30864                   29   6.4  

>supercontig_1.2 of Capsaspora owczarzaki ATCC 30864
          Length = 2668053

 Score =  450 bits (1157), Expect(2) = e-134
 Identities = 243/523 (46%), Positives = 310/523 (59%), Gaps = 103/523 (19%)
 Frame = +3

Query: 38      VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQ---------------- 81
               V VLDFV P+P G+ WGLGGTCVNVGCIPKKLMHQA LLG+A++                
Sbjct: 1734624 VCVLDFVKPSPQGSTWGLGGTCVNVGCIPKKLMHQACLLGEAIEVTKKARKGQPREAQAR 1734803

Query: 82      ------------------------------------DSRNYGWKVEET-VKHDWDRMIEA 104
                                                   D+  +GW+VE+  +KHDW +++  
Sbjct: 1734804 AHQTSIEVF*LEHAKTTQTP*LRKPLF*TLV*LAL*DAEKFGWEVEKANIKHDWSKLVMG 1734983

Query: 105     VQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGER 164
               V +HIG LN+ YRV+LRE  V Y NAYG F   H I+ T+ K K    +AE F++A G R
Sbjct: 1734984 VSDHIGGLNFAYRVSLRENNVTYLNAYGVFKDAHTIECTDKKRKVTTLTAEHFVLAVGGR 1735163

Query: 165     PRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL 224
               P+Y  IPG +E  I+SDD+FSLPY PGKTLVVGASYVALECAGFL G+G D TVM RSI 
Sbjct: 1735164 PKYPDIPGARELGITSDDMFSLPYAPGKTLVVGASYVALECAGFLTGLGYDTTVMARSIF 1735343

Query: 225     LRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIE-----AGTPGRLRVVAQSTNSEEI 279
               LRGFDQ  A +I  +M EHG KF+R+ VP+ +E+IE     A    R+RV  +   + E 
Sbjct: 1735344 LRGFDQQCAEQIAAYMSEHGTKFLRRCVPLSLERIEPEADSATGRHRIRVTWEDGLANEP 1735523

Query: 280     IEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDK 339
                   ++TV+ AIGR+A T  IGLE +G+K N  +GK+     EQT+VP ++AIGD++  +
Sbjct: 1735524 GSDVFDTVLFAIGREAVTSTIGLEALGLKAN-ASGKVD-APLEQTSVPNVFAIGDVINGR 1735697

Query: 340     VELTPVAIQ---------------------------------------------AGRLLA 354
                ELTPVAIQ                                             AGRLLA
Sbjct: 1735698 PELTPVAIQVRVWSSSFAREGLLHSGLCCRGLIPSLPLPRLLPIIIIFSHDDA*AGRLLA 1735877

Query: 355     QRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIP 414
               +RLY G+T + DY N+PTTVFTPLEYG  G++EE A+  + EENIEV+H YF PLEWT+ 
Sbjct: 1735878 KRLYGGATTQMDYANIPTTVFTPLEYGCIGMAEEDAIALYKEENIEVFHQYFQPLEWTVA 1736057

Query: 415     SRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457
                R  + CY K+ICN  DN RV+G H+LGPNAGE+TQG+  A +
Sbjct: 1736058 HRPASTCYCKLICNKLDNMRVIGLHILGPNAGEITQGYGVAFR 1736186



 Score =  168 bits (426), Expect = 7e-42
 Identities = 131/417 (31%), Positives = 199/417 (47%), Gaps = 67/417 (16%)
 Frame = -2

Query: 133    QFIGPHRIKATNNKGKEKIYSAERFLIATGER----------------------PRY--- 167
              +F+GP ++         KIYSA+  LIATG                        PRY   
Sbjct: 397985 RFVGPKQVSVDG-----KIYSAKHILIATGSYAKVCVQVYAQPFFYRCLFC*LVPRYSSW 397821

Query: 168    LG--------IPGDKEYCISSDDLFSLPYCPGKTLVVGASYV------------------ 201
              LG        +PG   + I+SD  F L   P K  VVGA YV                  
Sbjct: 397820 LGLRCAQLPDVPG-AHHGITSDGFFELNEQPKKVAVVGAGYVPVFFFGGGLHYLKFEQSV 397644

Query: 202    --------------ALECAGFLAGIGLDVTVMVRSI-LLRGFDQDMANKIGEHMEEHGIK 246
                            A+E AG    +G +V+++VR   +LR FD  +   + E +   G+ 
Sbjct: 397643 RTDIQMRHT*SRYIAVELAGIFRALGSEVSLLVRHDGVLRKFDSMLHKGVEEELTASGVN 397464

Query: 247    FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVG 306
               +   +   V  +     G L +   +  ++      ++ ++ AIGR      + LE  G
Sbjct: 397463 LL---LNTHVSSVTKDDSGHLSLALTNGTTQS----GFDCLVWAIGRSPTIEDLDLEKTG 397305

Query: 307    VKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGST-VKC 365
              V + +K G I V + + T    I+A+GD+     +LTPVAI AGR L++RL+AG T +K 
Sbjct: 397304 VSL-DKDGLIKVDEFQNTTHEGIHAVGDVASHW-QLTPVAIAAGRRLSERLFAGKTDLKL 397131

Query: 366    DYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKI 425
              +YEN+ + VF+    G  GLSEE A+ K G++N+++Y + F  +  ++ +R   K   K+
Sbjct: 397130 EYENIASVVFSHPALGTVGLSEEDAIAKHGKDNLKIYSATFTNMYHSMTTR-KTKTRVKL 396954

Query: 426    ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
              +C  K+ E+V+G HV+G  A E+ QGFA A+K G TK Q D T+ IHP  +E   TL
Sbjct: 396953 VCLGKE-EKVIGVHVIGIGADEMIQGFAVAVKMGATKAQFDDTVAIHPTASEELVTL 396786



 Score = 47.0 bits (110), Expect(2) = e-134
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +2

Query: 459     GLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGCUG 499
               G TK   D T+GIHP C+E FTTL +T+ SG      GC G
Sbjct: 1736276 GATKDDFDMTVGIHPTCSENFTTLDITRASGLDPGAKGC*G 1736398



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = -2

Query: 60     VNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVK 95
              VNVGC+PKK+M   A + +AL D+ +YG+ V  TVK
Sbjct: 398453 VNVGCVPKKVMWNTASMAEALHDAPDYGFDV--TVK 398352


>supercontig_1.13 of Capsaspora owczarzaki ATCC 30864
          Length = 955311

 Score =  123 bits (308), Expect = 3e-28
 Identities = 98/357 (27%), Positives = 169/357 (47%), Gaps = 5/357 (1%)
 Frame = -1

Query: 92     ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKI 151
              E VK D  +++ A    +  L  G  + L++ KV Y   +G+  G   +      G  ++
Sbjct: 534756 ENVKLDLPKLMAAKDKAVTGLTGGVEMLLKKNKVDYVKGHGKITGAQEVTVDLLGGGSQV 534577

Query: 152    YSAERFLIATG-ERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLA 210
                A+R LIATG E   + GI  D++  +SS    +L   P K +V+G   + LE     +
Sbjct: 534576 LKAKRILIATGSEVTPFPGIAIDEQTIVSSTGALALKAVPKKMIVIGGGVIGLELGSVWS 534397

Query: 211    GIGLDVTVM--VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLR 268
               +G +VTV+  +  I   G D ++A      + + G+ F    +  KV        G ++
Sbjct: 534396 RLGAEVTVVEFLGGIGGAGIDGEVAKNFQRVLTKQGLNF---KLNTKVTGATKQANGSVK 534226

Query: 269    VVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPY 328
              V  +S +       + + +++AIGR   T  +GL+  GVK++ + G++ V +   TNVP 
Sbjct: 534225 VNVESADGSVKETLDADVLLVAIGRRPYTNNLGLKEAGVKVDNR-GRVEVNNMFTTNVPS 534049

Query: 329    IYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEE 388
              IYAIGD+++  + L   A   G +LA     G     DY NVP+ ++T  E    G +EE
Sbjct: 534048 IYAIGDVIQGPM-LAHKAEDEG-ILAVEGMCGGHPHIDYNNVPSVIYTHPEVAWVGKTEE 533875

Query: 389    KAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKC--YAKIICNTKDNERVVGFHVLGP 443
              +      E  I  +     P      ++ NN    + K++   K  ++++G H++GP
Sbjct: 533874 QLKADGVEYTIGKF-----PFVANSRAKTNNDTDGFVKVL-GDKKTDQILGAHIIGP 533722



 Score = 35.4 bits (80), Expect = 0.089
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 52     RWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYG 87
              R  LGGTC+NVGCIP K L++ +     A  D  N G
Sbjct: 534997 RGALGGTCLNVGCIPSKALLNNSHYYHMAQHDFANRG 534887



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 18/220 (8%)
 Frame = -2

Query: 165    PRYLGIPGDKEYCI----SSDD--LFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTV 218
              PR L +PG     +    S +D   F+        ++VG+S++ +E A  +A     VTV
Sbjct: 504881 PRILNVPGSTSKGVHVLRSPEDSAAFAADAENKNVVIVGSSFIGMEAAAAIAKKAASVTV 504702

Query: 219    M-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSE 277
              + + +   R F + +   + +   ++ IK +     +K   I  G  G +  V  +  + 
Sbjct: 504701 LGLEAPFSRVFGEKVGAAVAKLHTDNNIKIVTSAAGVK--SINTGADGGITGVELADGT- 504531

Query: 278    EIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPV-----------TDEEQTNV 326
               ++ G+   V+  +G    T+ +     GV +N   G I V              +    
Sbjct: 504530 -VLPGQ--VVLFGVGVQLNTQFV-KAGAGVTVN-PDGSISVDKFGHAGNGLYVAGDVARF 504366

Query: 327    PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCD 366
              PY Y+       ++E   VA + G ++ + + AG   + D
Sbjct: 504365 PYKYSASGSAAVRIEHFQVAERLGSIVGKNI-AGKATEID 504249


>supercontig_1.12 of Capsaspora owczarzaki ATCC 30864
          Length = 1052152

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = -1

Query: 53     WGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSL 112
              W     C  + C     + Q  LL + +   R   W+     K+   R I A   H+ S+
Sbjct: 471046 WLYSRCCKRLCCSEAPEILQTNLLSRRILVKRKCLWRTPCECKYSIPRAISAAIEHLKSM 470867

Query: 113    NWG 115
              +WG
Sbjct: 470866 SWG 470858


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,226,111
Number of Sequences: 89
Number of extensions: 240720
Number of successful extensions: 1083
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 215
length of query: 499
length of database: 9,347,932
effective HSP length: 104
effective length of query: 395
effective length of database: 9,338,676
effective search space: 3688777020
effective search space used: 3688777020
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)