TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete #U:498
         (499 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01000989.1| Ascogregarina taiwanensis Contig1141, whole g...    57   6e-09
gb|ABJQ01004901.1| Ascogregarina taiwanensis CLRanP104-A09.b1.ab...    47   4e-06
gb|ABJQ01001860.1| Ascogregarina taiwanensis Contig2107, whole g...    28   3.2  

>gb|ABJQ01000989.1| Ascogregarina taiwanensis Contig1141, whole genome shotgun sequence
          Length = 858

 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 24/53 (45%), Positives = 35/53 (66%)
 Frame = -2

Query: 421 CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHP 473
           C  K++C    N  VVGFH +GP+AGE+TQG+A AL+ G TK  ++ ++   P
Sbjct: 845 CLVKLVCRKSQNLLVVGFHCVGPHAGELTQGYALALQLGATKVSMNVSLWFTP 687



 Score = 37.4 bits (85), Expect = 0.004
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -2

Query: 466 DSTIGIHPVCAEVFTTLSVTKRSGASILQAGCUG 499
           D+T+GIHP  AE F  +++T+ SG S + AG  G
Sbjct: 515 DNTVGIHPTDAEAFHNMTITRASGESWIAAGGCG 414


>gb|ABJQ01004901.1| Ascogregarina taiwanensis CLRanP104-A09.b1.ab1, whole genome
           shotgun sequence
          Length = 775

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
 Frame = -1

Query: 359 AGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDN 418
           AG     +YE +P+ V+T  E    G +EE+       E IE Y    +P      +R N
Sbjct: 646 AGLGGHVNYEAIPSVVYTHPEVAGVGKTEEQ----LKAEGIE-YKKGTFPFAANSRARTN 482

Query: 419 NKCYAKI-ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 477
           +     + +   K  ++++G  ++GP AG++ Q     ++ G + + +  T   HP  AE
Sbjct: 481 DDFEGNVKVLTEKSTDKILGAWIIGPQAGDLIQELVLGMEYGASSEDIARTTHAHPALAE 302


>gb|ABJQ01001860.1| Ascogregarina taiwanensis Contig2107, whole genome shotgun sequence
          Length = 1200

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 21/76 (27%), Positives = 30/76 (39%)
 Frame = +2

Query: 76  LGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFI 135
           +GQA        W  E    H++ R I  V N    +N  YR+A   K  +  N+ G  I
Sbjct: 299 IGQASYQHCFGSW--ESGTSHNFTREILIVCN----INSTYRIAGSAKSFLNSNSQGNGI 460

Query: 136 GPHRIKATNNKGKEKI 151
           GP    +   K    +
Sbjct: 461 GPESTNSVKRKASRSL 508


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,491,359
Number of Sequences: 5379
Number of extensions: 49186
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of query: 499
length of database: 2,049,803
effective HSP length: 91
effective length of query: 408
effective length of database: 1,560,314
effective search space: 636608112
effective search space used: 636608112
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)