TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_sal selenoprotein [Salmo salar]
         (137 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349464.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   2.3  

>gb|GL349464.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.32,
              whole genome shotgun sequence
          Length = 401146

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 56     FLMERWALYHNLEYDSGEEKNPRLIF----YDDKDEVVQTVPVKKMKV 99
              +L++ W  +  L   S + ++ RL F     DDK E+V  VPV + KV
Sbjct: 386847 WLIDGWEPFGELGIGSWDSESSRLSFDVTEKDDKYEIVAHVPVPRDKV 386990


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,720,466
Number of Sequences: 131
Number of extensions: 35350
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 5
length of query: 137
length of database: 9,560,209
effective HSP length: 89
effective length of query: 48
effective length of database: 9,548,550
effective search space: 458330400
effective search space used: 458330400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)