TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_sal selenoprotein [Salmo salar]
         (137 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   1.5  

>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome
            shotgun sequence
          Length = 1007773

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
 Frame = +3

Query: 44   GUAIKKMPALYMFLME---RWALYHNLEYDSGEEKNPRLIFYDD---KDEVVQTVPVKKM 97
            G  + +MP L  FL +    W +  N+ Y +G  +   +  Y++   K EV+     K  
Sbjct: 7548 G*MLNRMPELKSFLKDGEAEWYVGVNVTYVTG--RRAVMHIYNEGGSKVEVIDLTVSKLQ 7721

Query: 98   KVDEISSLLDSLGFYKRSQKGEEVPEE 124
                + +L+    F KRS++  E+P E
Sbjct: 7722 TKKALHALMAEEEFVKRSEEAVEMPHE 7802


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,113,581
Number of Sequences: 31
Number of extensions: 34090
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 1
length of query: 137
length of database: 7,911,228
effective HSP length: 87
effective length of query: 50
effective length of database: 7,908,531
effective search space: 395426550
effective search space used: 395426550
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)