TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_sal selenoprotein [Salmo salar]
         (137 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   4.4  
gb|GL290992.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   7.5  

>gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig9,
              whole genome shotgun sequence
          Length = 1029409

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 93     PVKKMKVDEISSLLDSLGFYKRSQKGEEVPEE 124
              P+ K  VDE+ SLL     Y   +K  ++P E
Sbjct: 108785 PIFKSTVDELDSLLKEYSGYSLIEKMNQIPNE 108690



 Score = 26.9 bits (58), Expect = 4.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 93    PVKKMKVDEISSLLDSLGFYKRSQKGEEVPEE 124
             P+ K  VDE+ SLL     Y   +K  ++P E
Sbjct: 95482 PIFKSTVDELDSLLKEYSGYSLIEKMNQIPNE 95387


>gb|GL290992.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold10,
               whole genome shotgun sequence
          Length = 1641145

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 93      PVKKMKVDEISSLLDSLGFYKRSQKGEEVPEE 124
               P+ K  VDE+ SLL     Y   +K +++P +
Sbjct: 1540975 PIFKSTVDELDSLLKEYSGYSLIEKMKQIPND 1540880



 Score = 26.2 bits (56), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 93      PVKKMKVDEISSLLDSLGFYKRSQKGEEVPEE 124
               P+ K  VDE+ SLL     Y   +K +++P +
Sbjct: 1618646 PIFKSTVDELDSLLKEYSGYSLIEKMKQIPND 1618741


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,209,271
Number of Sequences: 42
Number of extensions: 47749
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 17
length of query: 137
length of database: 10,980,844
effective HSP length: 90
effective length of query: 47
effective length of database: 10,977,064
effective search space: 515922008
effective search space used: 515922008
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)