TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fep15_sal selenoprotein [Salmo salar] (137 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01001435.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 0.73 gb|ABWE01001571.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 0.96 gb|ABWE01000362.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 1.2 gb|ABWE01001172.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 29 1.6 gb|ABWE01000238.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 29 2.1 gb|ABWE01000028.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 28 3.6 gb|ABWE01001333.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 27 6.2 gb|ABWE01001195.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 27 6.2 gb|ABWE01000181.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 27 8.1 >gb|ABWE01001435.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont105.4, whole genome shotgun sequence Length = 13762 Score = 30.4 bits (67), Expect = 0.73 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 Query: 16 MTEEDVTDTAIEERPVIAKGILKAPSVVGUAIKKMPAL 53 +TE+D T +EE PV+ K ++ P VV + P + Sbjct: 9323 VTEKDQTSALVEEAPVVVKPVVARPVVVAAPVVVEPVV 9210 >gb|ABWE01001571.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont355.4, whole genome shotgun sequence Length = 11851 Score = 30.0 bits (66), Expect = 0.96 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -1 Query: 16 MTEEDVTDTAIEERPVIAKGILKAPSVVGUAIKKMPAL 53 +TE+D T +EE PV+ + ++ P VV + P + Sbjct: 9997 VTEQDRTSAPVEEAPVVVEPVVDGPVVVAAPVVAAPVV 9884 >gb|ABWE01000362.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont185.1, whole genome shotgun sequence Length = 47387 Score = 29.6 bits (65), Expect = 1.2 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = +3 Query: 16 MTEEDVTDTAIEERPVIAKGILKAPSVVGUAIKKMPALYMFLMERWALYHNLEYDSG 72 +TE+D +EE PV+ K ++ P VV A + +P L RW L SG Sbjct: 7257 VTEQDRASVPVEEAPVVFKPVVAGPVVV--AARSLPR--WSLWSRWLLLSRRIKSSG 7415 >gb|ABWE01001172.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont30.8, whole genome shotgun sequence Length = 18155 Score = 29.3 bits (64), Expect = 1.6 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 16 MTEEDVTDTAIEERPVIAKGILKAPSVVGUAIKKMPAL 53 +TE+D T +EE PV+ + ++ P VV + P + Sbjct: 12864 VTEKDRTSAPVEEAPVVVEPVVTRPVVVAAPVVAAPVV 12977 >gb|ABWE01000238.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont49.1, whole genome shotgun sequence Length = 58217 Score = 28.9 bits (63), Expect = 2.1 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -1 Query: 16 MTEEDVTDTAIEERPVIAKGILKAPSVVGUAIKKMPAL 53 +T++D T T +EE PV+ + ++ P VV + P + Sbjct: 39596 VTDKDRTSTPVEEAPVVVEPVVAGPVVVTAPVVVEPVV 39483 >gb|ABWE01000028.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont9.12, whole genome shotgun sequence Length = 118746 Score = 28.1 bits (61), Expect = 3.6 Identities = 10/38 (26%), Positives = 21/38 (55%) Frame = -3 Query: 16 MTEEDVTDTAIEERPVIAKGILKAPSVVGUAIKKMPAL 53 +TE+D T +EE PV+ + ++ P ++ + P + Sbjct: 23731 VTEQDWTSAQVEEAPVVVEPVVAGPVLIATPVVVKPVV 23618 >gb|ABWE01001333.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont0.31, whole genome shotgun sequence Length = 15564 Score = 27.3 bits (59), Expect = 6.2 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +2 Query: 3 AFLLLTLAFSATGMTEEDVTDTA--IEERPVIAKGILKAPS 41 +F +L A + T+ED TDT P ++G++K P+ Sbjct: 4712 SFSILDTAINVAAYTDEDTTDTVNPFASAPS*SRGVVKTPT 4834 >gb|ABWE01001195.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont42.17, whole genome shotgun sequence Length = 17686 Score = 27.3 bits (59), Expect = 6.2 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = -1 Query: 16 MTEEDVTDTAIEERPVIAKGILKAPSVVGUAIKKMPAL 53 +TE+D T +EE PVI + ++ P V + P + Sbjct: 15856 VTEQDWTSAPVEETPVIVEPVVAGPVVFYALVVAAPVV 15743 >gb|ABWE01000181.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont121.9, whole genome shotgun sequence Length = 64743 Score = 26.9 bits (58), Expect = 8.1 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = -1 Query: 3 AFLLLTLAFSATGMTEEDVTDTA--IEERPVIAKGILKAPS 41 +F +L A + T+ED TDT P ++G++K P+ Sbjct: 44832 SFSILDTAINVAAYTDEDTTDTVNPFAPAPS*SRGVVKTPT 44710 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,364,346 Number of Sequences: 5422 Number of extensions: 85534 Number of successful extensions: 314 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 174 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 131 Number of HSP's gapped (non-prelim): 197 length of query: 137 length of database: 22,486,378 effective HSP length: 94 effective length of query: 43 effective length of database: 21,976,710 effective search space: 944998530 effective search space used: 944998530 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)