TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fep15_sal selenoprotein [Salmo salar] (137 letters) Database: C.parvum/genome.fa 8 sequences; 9,102,324 total letters Searching........done Score E Sequences producing significant alignments: (bits) Value gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol... 27 1.5 gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol... 26 3.2 gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol... 25 5.5 gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol... 25 7.2 gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol... 24 9.4 >gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence Length = 1344712 Score = 26.9 bits (58), Expect = 1.5 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%) Frame = -1 Query: 66 NLEYDSGEEKNPRLIFYDDK--------DEVVQTVPVKKMKVDEISSLLDSLGFYKRS 115 +LEYDSG++ FYD++ D++++ K KV +I SL ++L Y +S Sbjct: 397108 SLEYDSGKKPEINDNFYDNEHFNSSNNYDQLIKN--SKYRKVSQIGSLDENLINYSKS 396941 Score = 24.6 bits (52), Expect = 7.2 Identities = 8/17 (47%), Positives = 11/17 (64%) Frame = -1 Query: 52 ALYMFLMERWALYHNLE 68 + Y F + W LY+NLE Sbjct: 1336507 SFYAFFLSAWPLYYNLE 1336457 Score = 24.6 bits (52), Expect = 7.2 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 17/61 (27%) Frame = +2 Query: 63 LYHNLEYDSGEEKNPRLIFYD-----------------DKDEVVQTVPVKKMKVDEISSL 105 L+ N+E DS +K+P D + +EV++T+ + ++D++ L Sbjct: 410015 LFRNMESDSESKKSPGKSIRDVDEEVLSILLKIVDLNPNSEEVLETIKISGFELDKVRDL 410194 Query: 106 L 106 L Sbjct: 410195 L 410197 >gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun sequence Length = 1099352 Score = 25.8 bits (55), Expect = 3.2 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 22/83 (26%) Frame = -2 Query: 36 ILKAPSVVGUAIKKMPALYMFLMERW----------------------ALYHNLEYDSGE 73 +L+ V+G I P + M+L++ W + H SG Sbjct: 344188 LLQTLEVIGDFITHFPVIVMYLLDEWDPILRLDKFIKKNNLGINSTDYNVNHRRSISSGI 344009 Query: 74 EKNPRLIFYDDKDEVVQTVPVKK 96 +N +F D KDE Q +KK Sbjct: 344008 MEN--TVFMDIKDEETQKDGIKK 343946 >gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun sequence Length = 875659 Score = 25.0 bits (53), Expect = 5.5 Identities = 28/116 (24%), Positives = 54/116 (46%) Frame = -2 Query: 5 LLLTLAFSATGMTEEDVTDTAIEERPVIAKGILKAPSVVGUAIKKMPALYMFLMERWALY 64 LL+ +A G+ DV + P + + VG A K +L F+ E+ Y Sbjct: 61404 LLVATGVAARGLDIPDVEFVINYDFPRSFEDYIHRIGRVGRANKTGISL-TFVTEQDVPY 61228 Query: 65 HNLEYDSGEEKNPRLIFYDDKDEVVQTVPVKKMKVDEISSLLDSLGFYKRSQKGEE 120 E++S +K L+ D+ DEV++ + + + +L+ +GF +++Q+ E Sbjct: 61227 V-YEFESKMKKEMELLKLDE-DEVLKNMNRVTVAQQKALLMLEEIGFNEKNQEARE 61066 >gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence Length = 1332857 Score = 24.6 bits (52), Expect = 7.2 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = -1 Query: 72 GEEKNPRLIFYDDKDEVVQTVPVKKMKVDEISSLLDS 108 G K R YDD E+ QT+ K E + DS Sbjct: 622244 GARKRARFTVYDDNQELNQTILCKSGPSSEDNIYFDS 622134 >gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun sequence Length = 1278458 Score = 24.3 bits (51), Expect = 9.4 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +3 Query: 69 YDSGEEKNPRLIFYDD 84 YD+ +EKNP YDD Sbjct: 1106490 YDNSKEKNPSWFEYDD 1106537 Database: C.parvum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,102,324 Number of sequences in database: 8 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,171,834 Number of Sequences: 8 Number of extensions: 13664 Number of successful extensions: 66 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 34 length of query: 137 length of database: 3,034,108 effective HSP length: 81 effective length of query: 56 effective length of database: 3,033,460 effective search space: 169873760 effective search space used: 169873760 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)