TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_sal selenoprotein [Salmo salar]
         (137 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl...    28   1.4  
dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp...    26   4.2  
dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...    25   7.2  

>dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete
              sequence
          Length = 739753

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -1

Query: 50     MPALYMFLMERWALYHNLEYDSGEEKNPRLIFYDDKDEVVQTVPVKKMKVDEISS 104
              M AL M  +E+  ++ NLEYD     NP+       +E V+   V+K K+D+++S
Sbjct: 551122 MKALEMGAVEKLIVWENLEYDRVVLMNPQ-----SGEETVRI--VQKEKLDQLAS 550979


>dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete
              sequence
          Length = 866983

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +2

Query: 50     MPALYMFLMERWALYHNLEYDSGEEKNPRLIFYDDKDEVVQTVPVKKMKVDEISS 104
              M AL M  +E+  ++ NLEY+     NP+       +E V+   V+K K+D+++S
Sbjct: 254678 MKALEMGAVEKLIVWENLEYERVVLMNPQ-----SGEETVRI--VQKEKLDQLAS 254821


>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score = 25.4 bits (54), Expect = 7.2
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 86     DEVVQTVPVKKMKVDEISSLLDSLGFYKRSQKGE 119
              +E ++ VPV   +  ++ S+L++L  Y  +++GE
Sbjct: 434212 EEWLEAVPVTISRASQVESVLEALEGYVAARRGE 434111


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,094,177
Number of Sequences: 20
Number of extensions: 21346
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 8
length of query: 137
length of database: 5,515,582
effective HSP length: 85
effective length of query: 52
effective length of database: 5,513,882
effective search space: 286721864
effective search space used: 286721864
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)