TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_ory selenoprotein [Oryzias latipes]
         (130 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349445.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   2.0  
gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   4.5  
gb|GL349491.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   7.7  
gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   7.7  

>gb|GL349445.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.13,
              whole genome shotgun sequence
          Length = 561051

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 4      FVLIFAFSVGASDTSNSTAEVIARGKLMAPS 34
              FV++   S  AS  +N+ A+VIA   L+APS
Sbjct: 255456 FVVVLETSAVASSVTNAHADVIAAVHLLAPS 255364


>gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12,
              whole genome shotgun sequence
          Length = 562821

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = +1

Query: 36     VGUAIKKLPELNRFLME-----RWALYHNLEYDSSEEKNPRLILYNEKDEVVKTVPVKEM 90
              +G +I KL +L+  ++E     +W  Y  +    SEE  PRL  +  +   + ++  K +
Sbjct: 251197 MGKSILKLQKLSSEVLETKFEVKWNEYMAVYGADSEEARPRLAFHGTRSSALASIAAKGL 251376

Query: 91     ----TADEISNLLDSLGFYKR 107
                  T   + +  DS G+Y R
Sbjct: 251377 VVPGTEPGVKHRTDS-GWYGR 251436


>gb|GL349491.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.59,
             whole genome shotgun sequence
          Length = 227305

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 25/92 (27%), Positives = 36/92 (39%)
 Frame = -2

Query: 39    AIKKLPELNRFLMERWALYHNLEYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISNL 98
             A+ +  EL     E  A +  LE +  E    R  L  E+DE+       E   DE+   
Sbjct: 28419 AVAERDELETERDEAVAEHDELETERDEAVAERDELETERDELQAERDELETERDELQAE 28240

Query: 99    LDSLGFYKRSKKGEEVPEEFQHFPLRTPRDEL 130
              D L   +   + E    E +   L+  RDEL
Sbjct: 28239 RDELETERDELQAERDELETERDELQAERDEL 28144


>gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.1,
              whole genome shotgun sequence
          Length = 716227

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = -1

Query: 72     LILYNEKDEVVKTVPVKEMTA------DEISNLLD 100
              L L+ +KDEVV  VP+  + A      D++ NL D
Sbjct: 463249 LTLFAQKDEVVDLVPLANLIALHYQIRDDVLNLTD 463145


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,339,115
Number of Sequences: 131
Number of extensions: 29281
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 23
length of query: 130
length of database: 9,560,209
effective HSP length: 88
effective length of query: 42
effective length of database: 9,548,681
effective search space: 401044602
effective search space used: 401044602
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)