TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_ory selenoprotein [Oryzias latipes]
         (130 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743888.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   2.0  
gb|GG743932.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   3.4  
gb|GG743885.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    27   7.7  

>gb|GG743888.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.6, whole
              genome shotgun sequence
          Length = 961754

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
 Frame = -1

Query: 26     ARG---KLMAPSVVGUAIKKLPELNRFLMERWALYHNLEYDSSEEKNPRLI--LYNEKDE 80
              ARG   +L+  S+VG   +++  L   L   W++Y N +           +     + +E
Sbjct: 797621 ARGVKHELLQESIVGLRPRRVFPLRHRLENNWSIYINKKMGRGSNLLDVFVARAVEDPEE 797442

Query: 81     VVKTVPVKEMTADEISNLLDSLGFYKRSKKGEEVPEEFQHFPLRTPRD 128
                   P +E  A+E   LL+     +  K+  E PE   H P++  RD
Sbjct: 797441 EDDAAPEREEEAEE---LLEHAVACREPKRHVETPE---HHPVQNERD 797316


>gb|GG743932.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.50, whole
              genome shotgun sequence
          Length = 253698

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 50     LMERWALYHNLEYDSSEEKNPRLILYNEKDEVVKTVP 86
              L E+W LYH+L + S E + PRL +    D  +   P
Sbjct: 105904 LFEQWTLYHSL-FHSFEMRCPRLEVIKLADAAIVRAP 105797


>gb|GG743885.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.3, whole
              genome shotgun sequence
          Length = 1275006

 Score = 26.6 bits (57), Expect = 7.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 40     IKKLPELNRFLMERWALYHNLEYDSSEEKNPRLIL 74
              +K++P  +R L   W+   +  YD++  +  RLIL
Sbjct: 492319 LKQVPSTSRVLKRGWSTRTS*RYDAASRRKRRLIL 492423


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,222,221
Number of Sequences: 1445
Number of extensions: 57489
Number of successful extensions: 264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 88
length of query: 130
length of database: 17,710,878
effective HSP length: 91
effective length of query: 39
effective length of database: 17,579,383
effective search space: 685595937
effective search space used: 685595937
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)