TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_ory selenoprotein [Oryzias latipes]
         (130 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   3.7  
gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   6.4  

>gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313,
              whole genome shotgun sequence
          Length = 1115623

 Score = 27.3 bits (59), Expect = 3.7
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +3

Query: 56     LYHNLEYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISNLLDSLGFYKRSKKGEEVP 115
              LY   E      +N   +   EK EVV     +    + +  +L  LGF+KR   GE  P
Sbjct: 600972 LYQRCERAVDNGENHFTLRRFEKREVVLRAFNERGEHESLVRVLVDLGFWKRQTPGEGSP 601151

Query: 116    EEFQ 119
                FQ
Sbjct: 601152 IGFQ 601163


>gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581242,
              whole genome shotgun sequence
          Length = 870537

 Score = 26.6 bits (57), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 106    KRSKKGEEVPEEFQHFPLRTPRDE 129
              +R   GEE+ ++F+  P++TPR E
Sbjct: 402929 ERKDAGEEMKKKFRVMPVQTPRSE 403000


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,993,498
Number of Sequences: 82
Number of extensions: 47173
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 11
length of query: 130
length of database: 14,267,206
effective HSP length: 90
effective length of query: 40
effective length of database: 14,259,826
effective search space: 570393040
effective search space used: 570393040
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)