TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_ory selenoprotein [Oryzias latipes]
         (130 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    33   0.041
gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   1.0  
gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    26   5.0  
gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   8.5  
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   8.5  

>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome
            shotgun sequence
          Length = 1007773

 Score = 33.1 bits (74), Expect = 0.041
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
 Frame = +3

Query: 7    IFAFSVGASDTSNSTAEVIARGKLMAPSVVGUAIKKLPELNRFLME---RWALYHNLEYD 63
            + AF   A   ++  A++++ G        G  + ++PEL  FL +    W +  N+ Y 
Sbjct: 7482 LLAFCFLAYSFASPEADIVSCG--------G*MLNRMPELKSFLKDGEAEWYVGVNVTYV 7637

Query: 64   SSEEKNPRLILYNE---KDEVVKTVPVKEMTADEISNLLDSLGFYKRSKKGEEVPEE 117
            +   +   + +YNE   K EV+     K  T   +  L+    F KRS++  E+P E
Sbjct: 7638 TG--RRAVMHIYNEGGSKVEVIDLTVSKLQTKKALHALMAEEEFVKRSEEAVEMPHE 7802


>gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun
              sequence
          Length = 1035082

 Score = 28.5 bits (62), Expect = 1.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 61     EYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISN 97
              E D  E+K+P     N +DEVV  +  +  T D++ +
Sbjct: 765602 EMDVDEDKDPEFTTSNSQDEVVDDIGEEASTEDDVDS 765492


>gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome shotgun
              sequence
          Length = 1029019

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 76     NEKDEVVKTVPVKEMTADEISNLLDSLGFYKRS 108
              N + EVVK   V+ +TA  +   L  + F KRS
Sbjct: 920290 NSRSEVVKYARVRALTAPFLEFFLGPMNFQKRS 920388


>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome
             shotgun sequence
          Length = 683011

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 37    GUAIKKLPELNRFLMERWALYHNLEYD 63
             G  ++K+P+ N +L      +H+L YD
Sbjct: 94536 GRTLRKIPDTNVYLRPNHL*FHSLSYD 94616


>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun
              sequence
          Length = 976485

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = -2

Query: 28     GKLMAPSVVGUAIKKLPELNRFLMERWALYHNLEYDSSEEKNPRLILYNEKDEVVKTVPV 87
              G+  A +  G A +  P+L   L++ +  Y   +Y     ++P L  Y + DEV      
Sbjct: 433892 GRPPAGNGAGVATRLGPQLPSELVKYFVGYVESKYSGMVYRSPFLPKYADSDEV-----C 433728

Query: 88     KEMTADEISNLLDS--LGFYKRSKKGEEVPEEFQHFPLRT 125
                  +  +   LDS   G  +R K+ + VP  F+ FP+++
Sbjct: 433727 GPFLSTILFERLDS*QCGVSRRPKQ-QSVPP*FRLFPVKS 433611


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,932,895
Number of Sequences: 31
Number of extensions: 30354
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 19
length of query: 130
length of database: 7,911,228
effective HSP length: 87
effective length of query: 43
effective length of database: 7,908,531
effective search space: 340066833
effective search space used: 340066833
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)