TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_ory selenoprotein [Oryzias latipes]
         (130 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   3.0  
gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   3.9  
gb|GL290987.1| Polysphondylium pallidum PN500 unplaced genomic s...    26   6.6  

>gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold9,
              whole genome shotgun sequence
          Length = 2264991

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 41     KKLPELNRFLMERWALYHNLEYDSSEEKNPRLIL 74
              +++  LNRF ++ W L  N   D +  KN +L+L
Sbjct: 597638 QRISNLNRFYIDIWDLCFNQFLDCTHTKNYKLLL 597537



 Score = 25.8 bits (55), Expect = 8.6
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 54      WALYHNLEYDSSEEKNPRLILYNEK---DEVVKTV 85
               W++Y+ ++Y S      RL+ +NE    ++V++TV
Sbjct: 1918496 WSVYNGIKYSSDNVGIGRLLTFNEGVSIEQVIETV 1918600


>gb|GL290994.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold12,
              whole genome shotgun sequence
          Length = 1032189

 Score = 26.9 bits (58), Expect = 3.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 72     LILYNEKDEVVKTVPVKEMTADEISNLLDSLG 103
              L L  +KD+  K  PVK   ADE+S L+  +G
Sbjct: 270835 LKLKKKKDDGAKKKPVKVKIADELSRLIYLIG 270930


>gb|GL290987.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold5,
              whole genome shotgun sequence
          Length = 536480

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 17/77 (22%), Positives = 37/77 (48%)
 Frame = -3

Query: 33     PSVVGUAIKKLPELNRFLMERWALYHNLEYDSSEEKNPRLILYNEKDEVVKTVPVKEMTA 92
              P +VG   K  PE+ + L++   +      DS E K  R+ L+  K++  +     +M  
Sbjct: 134985 PYIVGRLTKVSPEIRQRLIDNHQIRAPKVADSEETKKMRVDLWTAKNQQRE----YDMKV 134818

Query: 93     DEISNLLDSLGFYKRSK 109
               + +   + + +++R+K
Sbjct: 134817 IKAAKSYEEIKYFRRAK 134767


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,921,898
Number of Sequences: 42
Number of extensions: 43077
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 15
length of query: 130
length of database: 10,980,844
effective HSP length: 89
effective length of query: 41
effective length of database: 10,977,106
effective search space: 450061346
effective search space used: 450061346
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)