TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_ory selenoprotein [Oryzias latipes]
         (130 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genom...    32   0.41 

>emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG31
          Length = 577967

 Score = 32.3 bits (72), Expect = 0.41
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 54     WALYHNLEYDSSEEKNPRLILYNEKDEVVKTVPVKEMT 91
              WAL   +E D + + +P L    +K E + TVPVK  T
Sbjct: 356285 WALSERVEIDCARDSDPDLRRPRQKHERIPTVPVKRQT 356398


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,483,643
Number of Sequences: 35
Number of extensions: 228063
Number of successful extensions: 932
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 38
length of query: 130
length of database: 65,311,373
effective HSP length: 99
effective length of query: 31
effective length of database: 65,307,908
effective search space: 2024545148
effective search space used: 2024545148
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)