TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fep15_ory selenoprotein [Oryzias latipes] (130 letters) Database: C.parvum/genome.fa 8 sequences; 9,102,324 total letters Searching........done Score E Sequences producing significant alignments: (bits) Value gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol... 27 1.7 gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol... 26 2.8 gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol... 25 4.8 gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol... 25 6.3 gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol... 24 8.3 gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol... 24 8.3 >gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun sequence Length = 985969 Score = 26.6 bits (57), Expect = 1.7 Identities = 14/39 (35%), Positives = 26/39 (66%) Frame = +2 Query: 59 NLEYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISN 97 +++Y ++E K +LY+EKD + KT PV+E++ + N Sbjct: 729416 DVQYATNESKVDDGLLYSEKDGLDKT-PVEELSRLNLMN 729529 Score = 25.8 bits (55), Expect = 2.8 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -1 Query: 75 YNEKDEVVKTVPVKEMTADEISNLLDSLGFYKRSKKGEEVPEE 117 YN +V TV ++MT +ISNL ++ + G P+E Sbjct: 236902 YNRFMKVALTVIAQQMTESQISNLKEAFILLDANCDGTLTPQE 236774 >gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun sequence Length = 1080900 Score = 25.8 bits (55), Expect = 2.8 Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 7/48 (14%) Frame = +2 Query: 59 NLEYDSSEEKNPRL-------ILYNEKDEVVKTVPVKEMTADEISNLL 99 N+E+DS E+ N R+ ++++ D +KE+ ++++N++ Sbjct: 156965 NIEFDSKEQINRRMKGSILNPLMFSFSDTETPKFELKELPGNDLNNII 157108 Score = 25.4 bits (54), Expect = 3.7 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +2 Query: 57 YHNLEYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISNLLDSLGF 104 Y+N+ Y + +KN + NEK+++ K E+ + + DS+ F Sbjct: 785252 YYNISYGITGKKNNIELGINEKNKLNKVRQFVELYILRVKEIWDSIKF 785395 >gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun sequence Length = 875659 Score = 25.0 bits (53), Expect = 4.8 Identities = 13/53 (24%), Positives = 30/53 (56%) Frame = -2 Query: 61 EYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISNLLDSLGFYKRSKKGEE 113 E++S +K L+ +E DEV+K + + + +L+ +GF +++++ E Sbjct: 61221 EFESKMKKEMELLKLDE-DEVLKNMNRVTVAQQKALLMLEEIGFNEKNQEARE 61066 >gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun sequence Length = 1099352 Score = 24.6 bits (52), Expect = 6.3 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -1 Query: 59 NLEYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISNLLDSLGFYKRSKKG 111 N+E ++S K+ + K ++ + K+ +I++ SL FY+RS+KG Sbjct: 444002 NIELNNSLNKHDET---SSKSTTLEKLSKKKRLKYKIASKFMSLIFYRRSRKG 443853 >gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence Length = 1344712 Score = 24.3 bits (51), Expect = 8.3 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +2 Query: 105 YKRSKKGEEVPEEFQHFP 122 Y+R KKGE +E H P Sbjct: 690257 YRRKKKGETKKDELVHIP 690310 >gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence Length = 1332857 Score = 24.3 bits (51), Expect = 8.3 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -2 Query: 65 SEEKNPRLILYNEKDEVVKTVPVKEMTADEISNLLDSLGFYKRSKK 110 SE +N I+ N+K E+ + DEI L +S K+ KK Sbjct: 1161313 SELENAAHIITNQKSEIESLEMALSASRDEIELLQESDRALKKEKK 1161176 Database: C.parvum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,102,324 Number of sequences in database: 8 Lambda K H 0.316 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,139,534 Number of Sequences: 8 Number of extensions: 13368 Number of successful extensions: 88 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 59 Number of HSP's gapped (non-prelim): 50 length of query: 130 length of database: 3,034,108 effective HSP length: 81 effective length of query: 49 effective length of database: 3,033,460 effective search space: 148639540 effective search space used: 148639540 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)