TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fep15_ory selenoprotein [Oryzias latipes] (130 letters) Database: C.muris/genome.fa 84 sequences; 9,245,251 total letters Searching...................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|DS989741.1| Cryptosporidium muris RN66 scf_1106632373429 geno... 28 0.58 gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 geno... 28 0.58 gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 geno... 27 0.99 gb|DS989738.1| Cryptosporidium muris RN66 scf_1106632373441 geno... 25 4.9 gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 geno... 25 4.9 gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno... 25 6.4 gb|DS989734.1| Cryptosporidium muris RN66 scf_1106632354001 geno... 24 8.4 >gb|DS989741.1| Cryptosporidium muris RN66 scf_1106632373429 genomic scaffold, whole genome shotgun sequence Length = 105261 Score = 28.1 bits (61), Expect = 0.58 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Frame = +3 Query: 7 IFAFSVGASDTSNS----TAEVIARGKLMA--PSVVGUAIKKLPELNRFLMERWALYHNL 60 +F+F D N+ +A V+ M P+ + I +N+F+ ++ +++ Sbjct: 63198 LFSFEALHQDICNTDRSISASVVISPTFMTLLPNFLRQLIDIFHFINKFMNFKYQTENDI 63377 Query: 61 EYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISNLLDS 101 D SE + N KDE ++ +P+ T+ + +N+ S Sbjct: 63378 SVDKSETNSE-----NSKDENLRNIPITTSTSLQSNNVTTS 63485 >gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 genomic scaffold, whole genome shotgun sequence Length = 528544 Score = 28.1 bits (61), Expect = 0.58 Identities = 24/78 (30%), Positives = 32/78 (41%) Frame = -1 Query: 15 SDTSNSTAEVIARGKLMAPSVVGUAIKKLPELNRFLMERWALYHNLEYDSSEEKNPRLIL 74 S T +STAE I L+ S G I+ +PE E SS NP ++ Sbjct: 415621 SATISSTAESITPKMLLIASKQGGVIEGIPE---------------EIISSRRPNPLIV- 415490 Query: 75 YNEKDEVVKTVPVKEMTA 92 K E K + +KE A Sbjct: 415489 ---KSEFAKAIEIKEYPA 415445 >gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 genomic scaffold, whole genome shotgun sequence Length = 772423 Score = 27.3 bits (59), Expect = 0.99 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 55 ALYHNLEYDSSEEKNPRLILYNEKDEVVKTVP 86 +++H LE D + K +LY E DE+V +P Sbjct: 326148 SIFHYLEMDQHDVKIHIRLLYGEVDEIVIVLP 326243 Score = 26.6 bits (57), Expect = 1.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +3 Query: 75 YNEKDEVVKTVPVKEMTADEISNLLDSLGFYKRSKKGEEVPEE 117 YN +V TV ++MT +ISNL ++ + G P+E Sbjct: 545442 YNRFKKVALTVIAQQMTESQISNLKEAFFALDANGDGTLTPQE 545570 >gb|DS989738.1| Cryptosporidium muris RN66 scf_1106632373441 genomic scaffold, whole genome shotgun sequence Length = 236830 Score = 25.0 bits (53), Expect = 4.9 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 29 KLMAPSVVGUAIKKLP 44 KLMAPS +G +KK P Sbjct: 41168 KLMAPSALGAILKKFP 41215 Score = 24.3 bits (51), Expect = 8.4 Identities = 17/62 (27%), Positives = 26/62 (41%) Frame = +1 Query: 41 KKLPELNRFLMERWALYHNLEYDSSEEKNPRLILYNEKDEVVKTVPVKEMTADEISNLLD 100 +KL L+ F +E W LYH S N L + ++ P+ + + NLL Sbjct: 199051 QKLQILHHFALEIWVLYHLS*IGSHRHLNSILQILR-----IQYAPISSSPS*PLHNLLS 199215 Query: 101 SL 102 L Sbjct: 199216 IL 199221 >gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 genomic scaffold, whole genome shotgun sequence Length = 723783 Score = 25.0 bits (53), Expect = 4.9 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -1 Query: 48 RFLMERWALYHNLEYDSSEEKNPRLILYNEKDEVVKTV 85 RFL++ +YH+L Y +S K L++ + D V ++ Sbjct: 641175 RFLIQNSDMYHDL*YVASSRKICELLILLQDDVHVSSI 641062 >gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole genome shotgun sequence Length = 1324930 Score = 24.6 bits (52), Expect = 6.4 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 67 EKNPRLILYNEKDEVVKTVPVKEMTADEISNLLDS 101 E+ R ILYNEK+ + +K++ DE S D+ Sbjct: 1241683 EEEFRRILYNEKEIDERLERIKKLLNDETSRYEDT 1241579 >gb|DS989734.1| Cryptosporidium muris RN66 scf_1106632354001 genomic scaffold, whole genome shotgun sequence Length = 406819 Score = 24.3 bits (51), Expect = 8.4 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -2 Query: 48 RFLMERWALYHNLEYDSSEEKNPRLILYNEKDEVVKTV 85 RFL E L+H+ D + +N LI N +++ +K + Sbjct: 168375 RFLNETLNLFHSTYKDQTSTENSNLIYENFQNKNLKYI 168262 Database: C.muris/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,245,251 Number of sequences in database: 84 Lambda K H 0.316 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,134,859 Number of Sequences: 84 Number of extensions: 13498 Number of successful extensions: 77 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 31 length of query: 130 length of database: 3,081,750 effective HSP length: 81 effective length of query: 49 effective length of database: 3,074,946 effective search space: 150672354 effective search space used: 150672354 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)