TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_ory selenoprotein [Oryzias latipes]
         (130 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp...    25   6.3  
dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp...    25   8.3  

>dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete
              sequence
          Length = 1621617

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 9      AFSVGASDTSNSTAEVIARGKLMAPSVVGUAIKKLPELNRFLME-RW 54
              +FS GA  +SNS++   A+  L A +    A+ K  ELN    E RW
Sbjct: 991098 SFSAGAISSSNSSSRYCAQRPLTAITDPSLALGKDRELNSGDQEKRW 991238


>dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete
               sequence
          Length = 1253087

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 48      RFLMERWALYHNLEYDSSEEKNP 70
               R +   WAL HN + +SS   NP
Sbjct: 1006238 RQVTSNWALQHNTQSESSTTANP 1006170


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.316    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,935,848
Number of Sequences: 20
Number of extensions: 18438
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 12
length of query: 130
length of database: 5,515,582
effective HSP length: 84
effective length of query: 46
effective length of database: 5,513,902
effective search space: 253639492
effective search space used: 253639492
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)