TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_onc selenoprotein [Oncorhynchus mykiss]
         (137 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG744089.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   3.0  
gb|GG743962.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    27   6.8  

>gb|GG744089.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.207,
             whole genome shotgun sequence
          Length = 65165

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -2

Query: 85    KDEVVQTVPVKKMKVDEISS 104
             +DE+VQT+PVK +++D  SS
Sbjct: 38719 EDEIVQTLPVKSLEIDCASS 38660


>gb|GG743962.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.80, whole
             genome shotgun sequence
          Length = 147863

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 17    TEENVTDTAIEERPVIAKGILKAPSVVGUAIKKMPELYTFLMERWALYHNLEYD--SGEE 74
             T++  T T      V A  ++++ S    ++ K+  +Y     RW   H L YD  +G +
Sbjct: 73502 TQKKRTSTQKNMAAVRAMPLVRSQSCSVASV*KLE*IYEHGRRRWHQLHQLAYDAEAGRD 73681

Query: 75    KNPRLIFYDDKDEVVQTVPV 94
              + R      KDE ++T  V
Sbjct: 73682 FHAR-----QKDEPIETAVV 73726


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,837,345
Number of Sequences: 1445
Number of extensions: 68741
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 69
length of query: 137
length of database: 17,710,878
effective HSP length: 92
effective length of query: 45
effective length of database: 17,577,938
effective search space: 791007210
effective search space used: 791007210
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)