TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_onc selenoprotein [Oncorhynchus mykiss]
         (137 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376604.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   9.6  
gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   9.6  

>gb|GL376604.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582007,
              whole genome shotgun sequence
          Length = 931704

 Score = 26.2 bits (56), Expect = 9.6
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +3

Query: 52     ELYTFLMERWALYHNLEYDSGEEKNPRLIFYDDKDEVVQTVPVKKMKVDEISS 104
              E+Y+   + +AL   +E    +  +     YD  + ++Q V     +VD I++
Sbjct: 305523 EMYSHAHQSFALVEEMEVSHAQVASKTQALYDSFENILQQVEALNTRVDVIAA 305681


>gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313,
              whole genome shotgun sequence
          Length = 1115623

 Score = 26.2 bits (56), Expect = 9.6
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 63     LYHNLEYDSGEEKNPRLIFYDDKDEVVQTVPVKKMKVDEISSLLDSLGFYKRSQKGEEVP 122
              LY   E      +N   +   +K EVV     ++ + + +  +L  LGF+KR   GE  P
Sbjct: 600972 LYQRCERAVDNGENHFTLRRFEKREVVLRAFNERGEHESLVRVLVDLGFWKRQTPGEGSP 601151

Query: 123    KEFQ 126
                FQ
Sbjct: 601152 IGFQ 601163


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,512,989
Number of Sequences: 82
Number of extensions: 55911
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 14,267,206
effective HSP length: 91
effective length of query: 46
effective length of database: 14,259,744
effective search space: 655948224
effective search space used: 655948224
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)