TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_onc selenoprotein [Oncorhynchus mykiss]
         (137 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000375.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   2.8  
gb|ABWE01001435.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   3.6  
gb|ABWE01001571.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   4.7  
gb|ABWE01000547.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   4.7  
gb|ABWE01000362.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   4.7  
gb|ABWE01001172.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   8.1  

>gb|ABWE01000375.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont23.1, whole genome
             shotgun sequence
          Length = 46431

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 16    MTEENVTDTAIEERPVIAKGILKAPSVVGUAIKKMP 51
             +TE+N T   +EE P++ + ++  P V+   +  +P
Sbjct: 37027 VTEQNWTSVLVEEAPMVVELVVSGPVVIATPVVDVP 36920


>gb|ABWE01001435.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont105.4, whole
            genome shotgun sequence
          Length = 13762

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 16   MTEENVTDTAIEERPVIAKGILKAPSVVGUAIKKMP 51
            +TE++ T   +EE PV+ K ++  P VV   +   P
Sbjct: 9323 VTEKDQTSALVEEAPVVVKPVVARPVVVAAPVVVEP 9216


>gb|ABWE01001571.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont355.4, whole
            genome shotgun sequence
          Length = 11851

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 16   MTEENVTDTAIEERPVIAKGILKAPSVVGUAIKKMP 51
            +TE++ T   +EE PV+ + ++  P VV   +   P
Sbjct: 9997 VTEQDRTSAPVEEAPVVVEPVVDGPVVVAAPVVAAP 9890


>gb|ABWE01000547.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont108.7, whole
             genome shotgun sequence
          Length = 36833

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 15    GMTEENVTDTAIEERPVIAKGILKAPSVVG--UAIKKMPELYTFLMERWAL 63
             G    N+   A++ RPVI +G +K+P + G     +   E+Y    ERW +
Sbjct: 14965 GTVVANIPAAALQ-RPVIPRGSIKSPRLEGTFELYRAQLEIYLVEHERWGI 14816


>gb|ABWE01000362.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont185.1, whole
            genome shotgun sequence
          Length = 47387

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 16   MTEENVTDTAIEERPVIAKGILKAPSVVGUAIKKMPELYTFLMERWALYHNLEYDSG 72
            +TE++     +EE PV+ K ++  P VV  A + +P     L  RW L       SG
Sbjct: 7257 VTEQDRASVPVEEAPVVFKPVVAGPVVV--AARSLPR--WSLWSRWLLLSRRIKSSG 7415


>gb|ABWE01001172.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont30.8, whole genome
             shotgun sequence
          Length = 18155

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 16    MTEENVTDTAIEERPVIAKGILKAPSVVGUAIKKMP 51
             +TE++ T   +EE PV+ + ++  P VV   +   P
Sbjct: 12864 VTEKDRTSAPVEEAPVVVEPVVTRPVVVAAPVVAAP 12971


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,677,755
Number of Sequences: 5422
Number of extensions: 90578
Number of successful extensions: 378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 224
length of query: 137
length of database: 22,486,378
effective HSP length: 94
effective length of query: 43
effective length of database: 21,976,710
effective search space: 944998530
effective search space used: 944998530
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)