TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_onc selenoprotein [Oncorhynchus mykiss]
         (137 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.17 of Capsaspora owczarzaki ATCC 30864                   30   0.59 
supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                    27   2.9  
supercontig_1.75 of Capsaspora owczarzaki ATCC 30864                   27   3.8  
supercontig_1.63 of Capsaspora owczarzaki ATCC 30864                   27   3.8  

>supercontig_1.17 of Capsaspora owczarzaki ATCC 30864
          Length = 792894

 Score = 29.6 bits (65), Expect = 0.59
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 11    FSATGMTEENVTDTAIEERPVIAKGI 36
             F  TG+ EE V D  +EE+ V+ KG+
Sbjct: 97832 FDDTGVAEEGVDDGTVEEKGVLEKGV 97909


>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 75      KNPRLIFYDDKDEVVQTVPVKKMKVDEISSL 105
               + PR + +D+    VQ VPV   KVD+IS++
Sbjct: 1205319 EQPRPVRFDNDKAEVQVVPVVLDKVDKISTI 1205227



 Score = 26.9 bits (58), Expect = 3.8
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = +3

Query: 32     IAKGILKAPSVVGUAIKKMPELYTFLMERWALYHNLEYDSGEEKNPRLIFYDDK------ 85
              +A   ++  S+V   IK  P+LY+F    +  Y   +     +    L+   +K      
Sbjct: 472410 LADDSVRIESLVKFEIKSQPDLYSFATALYLQYQRFQDHFQVDLFEELLIKSNKAISGIM 472589

Query: 86     -DEVVQTVPVKKMKVDEISSLLDSLGFYKRSQKGEEVPKEFQHFPLRAPRDEL 137
               +++V+T+PV +  V +     +S   ++ +  G     +   F    P D L
Sbjct: 472590 FNKLVKTIPVVRQTVSK-----ESYAMFEGASYGGRQDVQRCQFQSMGPEDYL 472733



 Score = 26.9 bits (58), Expect = 3.8
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = +3

Query: 32      IAKGILKAPSVVGUAIKKMPELYTFLMERWALYHNLEYDSGEEKNPRLIFYDDK------ 85
               +A   ++  S+V   IK  P+LY+F    +  Y   +     +    L+   +K      
Sbjct: 3147663 LADDSVRIESLVKFEIKSQPDLYSFATALYLQYQRFQDHFQVDLFEELLIKSNKAISGIM 3147842

Query: 86      -DEVVQTVPVKKMKVDEISSLLDSLGFYKRSQKGEEVPKEFQHFPLRAPRDEL 137
                +++V+T+PV +  V +     +S   ++ +  G     +   F    P D L
Sbjct: 3147843 FNKLVKTIPVVRQTVSK-----ESYAMFEGASYGGRQDVQRCQFQSMGPEDYL 3147986


>supercontig_1.75 of Capsaspora owczarzaki ATCC 30864
          Length = 8695

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = -2

Query: 32   IAKGILKAPSVVGUAIKKMPELYTFLMERWALYHNLEYDSGEEKNPRLIFYDDK------ 85
            +A   ++  S+V   IK  P+LY+F    +  Y   +     +    L+   +K      
Sbjct: 4959 LADDSVRIESLVKFEIKSQPDLYSFATALYLQYQRFQDHFQVDLFEELLIKSNKAISGIM 4780

Query: 86   -DEVVQTVPVKKMKVDEISSLLDSLGFYKRSQKGEEVPKEFQHFPLRAPRDEL 137
             +++V+T+PV +  V +     +S   ++ +  G     +   F    P D L
Sbjct: 4779 FNKLVKTIPVVRQTVSK-----ESYAMFEGASYGGRQDVQRCQFQSMGPEDYL 4636


>supercontig_1.63 of Capsaspora owczarzaki ATCC 30864
          Length = 7628

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = -3

Query: 32   IAKGILKAPSVVGUAIKKMPELYTFLMERWALYHNLEYDSGEEKNPRLIFYDDK------ 85
            +A   ++  S+V   IK  P+LY+F    +  Y   +     +    L+   +K      
Sbjct: 4863 LADDSVRIESLVKFEIKSQPDLYSFATALYLQYQRFQDHFQVDLFEELLIKSNKAISGIM 4684

Query: 86   -DEVVQTVPVKKMKVDEISSLLDSLGFYKRSQKGEEVPKEFQHFPLRAPRDEL 137
             +++V+T+PV +  V +     +S   ++ +  G     +   F    P D L
Sbjct: 4683 FNKLVKTIPVVRQTVSK-----ESYAMFEGASYGGRQDVQRCQFQSMGPEDYL 4540


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,607,409
Number of Sequences: 89
Number of extensions: 36466
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 18
length of query: 137
length of database: 9,347,932
effective HSP length: 89
effective length of query: 48
effective length of database: 9,340,011
effective search space: 448320528
effective search space used: 448320528
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)