TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_onc selenoprotein [Oncorhynchus mykiss]
         (137 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, compl...    28   1.4  
dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...    26   4.2  

>dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, complete genome, complete
              sequence
          Length = 513455

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 12     SATGMTEENVTDTAIEERPVIAKGILKAPSVVGUAIKKMPELYTFLMERWALYHNL 67
              S T   EENV D   E+RP+I              ++K P+ +T   ++ +  HNL
Sbjct: 113422 STTSAIEENVYDGCAEKRPMI--------------LRKTPQKHTLTNDQSSKKHNL 113297



 Score = 27.7 bits (60), Expect = 1.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 12    SATGMTEENVTDTAIEERPVIAKGILKAPSVVGUAIKKMPELYTFLMERWALYHNL 67
             S T   EENV D   E+RP+I              ++K P+ +T   ++ +  HNL
Sbjct: 91012 STTSAIEENVYDGCAEKRPMI--------------LRKTPQKHTLTNDQSSKKHNL 90887


>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 86     DEVVQTVPVKKMKVDEISSLLDSLGFYKRSQKGEEV-PKE 124
              +E ++ VPV   +  ++ S+L++L  Y  +++GE + P+E
Sbjct: 434212 EEWLEAVPVTISRASQVESVLEALEGYVAARRGEPLTPRE 434093


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,117,080
Number of Sequences: 20
Number of extensions: 21431
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 8
length of query: 137
length of database: 5,515,582
effective HSP length: 85
effective length of query: 52
effective length of database: 5,513,882
effective search space: 286721864
effective search space used: 286721864
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)