TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_onc selenoprotein [Oncorhynchus mykiss]
         (137 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01003355.1| Ascogregarina taiwanensis Contig3693, whole g...    26   1.8  
gb|ABJQ01003364.1| Ascogregarina taiwanensis Contig3703, whole g...    24   5.3  
gb|ABJQ01003411.1| Ascogregarina taiwanensis Contig3753, whole g...    23   9.1  

>gb|ABJQ01003355.1| Ascogregarina taiwanensis Contig3693, whole genome shotgun sequence
          Length = 3370

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
 Frame = +1

Query: 20  NVTDTAIEERPVIAKGILKA---------PSVVGUAIKKMPELYTFLMERWALYHNLEY 69
           ++T  + E+R V+ +G  K+         PS+ G A K++  L  +L+ RW     +E+
Sbjct: 772 DLTSPSREQRRVLEEGSRKSYSLADSIA*PSIWGMAGKQVQTLLGYLVRRWHAS*QMEF 948


>gb|ABJQ01003364.1| Ascogregarina taiwanensis Contig3703, whole genome shotgun sequence
          Length = 4281

 Score = 24.3 bits (51), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 116  QKGEEVPKEFQHFPLRAPRDEL 137
            Q+G +V K   H PL AP +E+
Sbjct: 1209 QRGSDVVKSVCHSPLTAPPEEV 1144


>gb|ABJQ01003411.1| Ascogregarina taiwanensis Contig3753, whole genome shotgun sequence
          Length = 5646

 Score = 23.5 bits (49), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 82  YDDKDEVVQTVPVKKMKV-DEISSLLDSLGFYKR 114
           Y D  EVV     +  K  DE+ SLL ++G+ +R
Sbjct: 426 YSDPREVVAVQETRAPKNRDELRSLLGTIGYVRR 527


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,315
Number of Sequences: 5379
Number of extensions: 8043
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 137
length of database: 2,049,803
effective HSP length: 78
effective length of query: 59
effective length of database: 1,630,241
effective search space: 96184219
effective search space used: 96184219
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)