TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Fep15_mus selenoprotein precursor [Mus musculus] (162 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 32 0.083 dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl... 29 0.70 dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, compl... 28 1.2 dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl... 28 1.6 dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 27 4.6 dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, compl... 26 6.0 dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp... 26 6.0 dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, compl... 26 7.8 dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp... 26 7.8 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 32.3 bits (72), Expect = 0.083 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Frame = -1 Query: 56 GQFNLLPLDPVCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRG 115 G+ NLLP +PV G ++A E+ A A+ R+ V VR+DK L + Sbjct: 357651 GRLNLLPCEPVLHG---KKATTESLIATASAVHRCFSSFHPRYVFVDVIVRNDKHALLKK 357481 Query: 116 LQIKYVRGSDP-VLKLLDDNGNIAEELSILKWNTDSVEEFLSE 157 + +K + + P + K + EL+ L+ + E L E Sbjct: 357480 MGLKQKQSAPPKISKRKSRRLDAIAELAELQQRRAQLREVLGE 357352 >dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete sequence Length = 528682 Score = 29.3 bits (64), Expect = 0.70 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -2 Query: 28 ALGAEFASEACRELGFSSNLLCSSCDL 54 AL A +ACR G LLC CD+ Sbjct: 473664 ALSASIGKQACRNHGLPQLLLCGCCDI 473584 >dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, complete genome, complete sequence Length = 584452 Score = 28.5 bits (62), Expect = 1.2 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Frame = -1 Query: 3 AGQGGWLRPALGLRLLLATAFQAASALGA---EFASEACRELGFSSNLLCSS 51 +G W R G+ L A+A +A ++ G+ EFAS A RE S LC+S Sbjct: 256237 SGASVWRRDRCGVPALAASALRADASSGSRPPEFASAARRE---SHTFLCAS 256091 Score = 27.3 bits (59), Expect = 2.7 Identities = 17/54 (31%), Positives = 21/54 (38%) Frame = -3 Query: 18 LLATAFQAASALGAEFASEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCC 71 + ATA AA+A A A C G + N C G+ CR CC Sbjct: 578027 MTATAPVAAAAAAAAVARYCCC*TGLTCNSPSRRCSAPGRTEYTSSSIRCRSCC 577866 >dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete sequence Length = 739753 Score = 28.1 bits (61), Expect = 1.6 Identities = 23/82 (28%), Positives = 32/82 (39%) Frame = -2 Query: 40 ELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETKKLYAGAILEVCGUKLGRFP 99 EL FSS+LL SS L +P + G C T G V + G P Sbjct: 361842 ELAFSSSLLSSSFSLALADKFVPRSDISAGTC-----CATGPASPGDPYTVLSPEFGADP 361678 Query: 100 QVQAFVRSDKPKLFRGLQIKYV 121 V+ V + LF L + ++ Sbjct: 361677 SVENVVDEPRDVLFSDLLVAFL 361612 >dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete sequence Length = 866983 Score = 26.6 bits (57), Expect = 4.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 4 GQGGWLRPALGLRLLLATAFQAAS 27 G WLRPALGL++ F A+ Sbjct: 315532 GTTKWLRPALGLQMCFCCCFDEAN 315603 >dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, complete genome, complete sequence Length = 457013 Score = 26.2 bits (56), Expect = 6.0 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 13/85 (15%) Frame = -3 Query: 7 GWLRPALGLRLLLATAFQAASA---------LGA----EFASEACRELGFSSNLLCSSCD 53 GWL A GL+LLL AASA LG + + +L SN + Sbjct: 17700 GWLLHASGLQLLLMLRHIAASAADLTDHRTRLGCSTEHQIPAHGLEDLFQISNFETEAQH 17521 Query: 54 LLGQFNLLPLDPVCRGCCQEEAQFE 78 + L L C GC Q+ + +E Sbjct: 17520 IALVQKLRQLKRACPGCMQKPSPYE 17446 >dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete sequence Length = 852727 Score = 26.2 bits (56), Expect = 6.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 28 ALGAEFASEACRELGFSSNLLCSSCD 53 ALG+E A+ C E S LC+S D Sbjct: 285090 ALGSESAAAVCSESSVPSRSLCTSSD 285167 >dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, complete genome, complete sequence Length = 513455 Score = 25.8 bits (55), Expect = 7.8 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 57 QFNLLPLDPVCRGC 70 QF+LLPL CRGC Sbjct: 1075 QFDLLPLSHWCRGC 1116 >dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete sequence Length = 859119 Score = 25.8 bits (55), Expect = 7.8 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -2 Query: 74 EAQFETKK-LYAGAILEVCGUKLGRFPQ-VQAFVRSDKPK 111 +A F+ ++ L A +ILE C KLGRF + F+ +K K Sbjct: 478658 KALFDAREYLRAASILEACTSKLGRFLRWYSLFLHGEKRK 478539 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.322 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,744,145 Number of Sequences: 20 Number of extensions: 62288 Number of successful extensions: 289 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 264 Number of HSP's gapped (non-prelim): 99 length of query: 162 length of database: 5,515,582 effective HSP length: 88 effective length of query: 74 effective length of database: 5,513,822 effective search space: 408022828 effective search space used: 408022828 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)